BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0013.p (188 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 161 8e-40 fecR [PT] COG3712 Fe2+-dicitrate sensor, membrane component Eco ... 123 2e-28 PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 120 2e-27 PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 119 5e-27 PA2051 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 100 3e-21 >PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 328 Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 93/188 (49%), Positives = 122/188 (64%), Gaps = 8/188 (4%) Query: 1 VQLQFDADQRLITLERGEIFIDTGRDAISPRHRPFLVQTAQARLQALGTRFAVRQQAGVT 60 V +++DA QRLI L RGEIF+ +G D SP HRP V+TAQ +ALGTRF VR Q T Sbjct: 144 VDVRYDAGQRLILLARGEIFLASGADTQSPTHRPLRVRTAQGLFEALGTRFNVRLQDAAT 203 Query: 61 RLSLLEGRVAVDTGQGTRTVIVP----GETVEIDAGGNLRRQATAAAAMDPTAWLDGTLV 116 LS+ EG V +D G R + P G++ I A G R + MD AW DG +V Sbjct: 204 CLSVSEGSVRIDAF-GARPLQAPVAEAGQSYRIAADGVRRLERPQ---MDAVAWADGLIV 259 Query: 117 TRDMRLGDVVAEMARYRHGWLYCEDGVASLKVSGVFQLRDGEAALESLAQALPVRIEQRT 176 TRDMRL D +AE+ARYR+G+L C VA L++SGV++L D + L+ LA+ LPVR+++ T Sbjct: 260 TRDMRLADFLAEVARYRNGYLGCAAEVADLRLSGVYRLDDTDKLLQVLARTLPVRLQRHT 319 Query: 177 RFWVRVTA 184 R+WVRV A Sbjct: 320 RWWVRVVA 327 >fecR [PT] COG3712 Fe2+-dicitrate sensor, membrane component Eco Escherichia coli K12 Length = 317 Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 14/188 (7%) Query: 3 LQFDADQRLITLERGEIFIDTGRDAISPRHRPFLVQTAQARLQALGTRFAVRQQAGVTRL 62 ++FDA QR + L GEI I T +DA+ RPF V T Q +L ALGT F VRQQ T+L Sbjct: 139 VRFDAHQRTVRLWYGEIAITTAKDAL---QRPFRVLTRQGQLTALGTEFTVRQQDNFTQL 195 Query: 63 SLLEGRVAVDTGQGTRTVIVPGETVEIDAGGNLRRQATAAAAMDP-----TAWLDGTLVT 117 + + V V P + ++AG +L+ A+ A+ P T+W L Sbjct: 196 DVQQHAVEVLLASA------PAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDILSF 249 Query: 118 RDMRLGDVVAEMARYRHGWLYCEDGVASLKVSGVFQLRDGEAALESLAQALPVRIEQRTR 177 D LG+V+A + RYR+G L C+ VA L++SG F L++ +A L +AQ LPV+I+ TR Sbjct: 250 SDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTLPVKIQSITR 309 Query: 178 FWVRVTAL 185 +W+ ++ L Sbjct: 310 YWINISPL 317 >PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 316 Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 99/180 (55%), Gaps = 8/180 (4%) Query: 1 VQLQFDADQRLITLERGEIFIDTGRDAISPRHRPFLVQTAQARLQALGTRFAVRQQAGVT 60 V L FDA QRL+ L RGEIF+D+ D RPF V TA+ARL A RF VRQ+ T Sbjct: 140 VDLAFDASQRLVRLLRGEIFVDSRADP-----RPFRVATAEARLHAGAARFNVRQEMAAT 194 Query: 61 RLSLLEGRVAVDTGQGTRTVIVPGETVEIDAGGNLRRQATAAAAMDPTAWLDGTLVTRDM 120 R+++L GRV + G + GE+V + A G RR A P AW G L+ M Sbjct: 195 RVAVLAGRVELSPLHGRGRWLESGESVRLGADGEARRLAFDGL---PDAWTRGMLMADRM 251 Query: 121 RLGDVVAEMARYRHGWLYCEDGVASLKVSGVFQLRDGEAALESLAQALPVRIEQRTRFWV 180 L +V+AE+ARYR G L C+ +A L VSG + L D L L P+++ T +W+ Sbjct: 252 PLAEVLAELARYRRGVLRCDPQLARLAVSGAYPLLDLRRTLGMLQATYPLKVRGVTDYWI 311 >PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 317 Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 8/182 (4%) Query: 1 VQLQFDADQRLITLERGEIFIDTGRDAISPRHRPFLVQTAQARLQALGTRFAVRQQAGVT 60 V ++FDA +R + L RGEI + TG D RP V +A+ RL+ +GTRF VRQ AG T Sbjct: 140 VDVRFDAGERRLLLLRGEIQLSTGHDP-----RPLHVYSAEGRLRPVGTRFDVRQFAGRT 194 Query: 61 RLSLLEGRVAVDTGQGTRTVIVPGETVEIDAGGNLRRQATAAAAMDPTAWLDGTLVTRDM 120 R+++ EG V V+ G ++ G ++ D R A + AW DG LV M Sbjct: 195 RVAVHEGAVQVENRAGQGLLLPSGRQLDFD---RERLGAPQPLPVGSGAWTDGMLVAAGM 251 Query: 121 RLGDVVAEMARYRHGWLYCEDGVASLKVSGVFQLRDGEAALESLAQALPVRIEQRTRFWV 180 RL + +AE+ARYR G L C+ + L++SG + L D E L +L LPV + + TR+WV Sbjct: 252 RLDEFLAEVARYRPGRLGCDPRIGGLRISGSYPLDDSERILATLPAVLPVEVRRVTRYWV 311 Query: 181 RV 182 V Sbjct: 312 GV 313 >PA2051 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 317 Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 7/184 (3%) Query: 1 VQLQFDADQRLITLERGEIFIDTGRDAISPRHRPFLVQTAQARLQALGTRFAVRQQAGVT 60 V+ +FD +R + L G + +D RD RPF+V T + +++A GTRF V + Sbjct: 140 VRPEFDGYRRRLRLREGRLLVDVARDPA----RPFVVDTGRGQVEAQGTRFQVSDDGASS 195 Query: 61 RLSLLEGRVAVDTGQGTRTVIVPGETVEIDAGGNLRRQATAAAAMDPTAWLDGTLVTRDM 120 R+ +LE RV + T G + ++ G++ DA L R A +AWLDG L RD Sbjct: 196 RVVVLESRVRITTADGRQCLLERGQSARFDASAILAR---GPAEGGESAWLDGRLEVRDR 252 Query: 121 RLGDVVAEMARYRHGWLYCEDGVASLKVSGVFQLRDGEAALESLAQALPVRIEQRTRFWV 180 LG+V+ + YR G + D A+L+VSG++ L D AL L Q+LP+R++ +WV Sbjct: 253 PLGEVLEALRAYRRGIISVADDAAALRVSGIYPLDDSGVALALLEQSLPIRLDYHGPYWV 312 Query: 181 RVTA 184 + + Sbjct: 313 SIAS 316