BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0109.p (617 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4036_1 [T] COG4252 Predicted transmembrane sensor domain Pae P... 137 8e-32 CC3327_1 Non COG 123 1e-27 CC3327_3 [T] COG0642 Signal transduction histidine kinase Ccr Ca... 122 2e-27 RSc1075_1 [T] COG4252 Predicted transmembrane sensor domain Rso ... 122 2e-27 RSc1075_3 [T] COG0642 Signal transduction histidine kinase Rso R... 112 3e-24 >PA4036_1 [T] COG4252 Predicted transmembrane sensor domain Pae Pseudomonas aeruginosa Length = 432 Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 130/259 (50%), Gaps = 27/259 (10%) Query: 38 LYDVGLRLFPAAEAGDVVIVAIDKKSLETLGRWPFSRSQHAALIRRICDQKPKVIGLDIL 97 LYD L P A +++VAID +SLE+LGRWP+ RS HA L+ R+ + + LD++ Sbjct: 50 LYDRLRNLAPLAVDPRILVVAIDDRSLESLGRWPWPRSVHAELLDRLAAAGARSVLLDVI 109 Query: 98 FSE-ESHGDEDAQLAHAMEQCGRVVLPVVIE--------PDQISGGLSITEPVSVVRSAA 148 FSE S+ D D QLA ++ + G V+LP++ E P +I P + + A Sbjct: 110 FSEPSSNPDSDRQLARSLCRAGNVLLPLLRESVPRYGEPPREIP-------PTAPLAGCA 162 Query: 149 AGIGRVGIVLDPDGIARSADIKNGSAG---ILFGEQMMRVAGEASFLYSDRLKG------ 199 AGIG + + D DG RS ++ G G L Q AG D ++ Sbjct: 163 AGIGHINVEADSDGTVRSVYLREGPLGQPRPLLAWQAFADAGAMPMPGLDDMRNLPGWQR 222 Query: 200 -DGLYFRFVGGPGSIQSISYADVMEGR-PTISLEGKYVLVGATAMGLGDFIPTPFSAGSF 257 + F+G S+ Y V+ G P L + VLVGATA GLGD TP SA Sbjct: 223 DHAIRIPFIGADAGFPSVPYVSVLRGEVPDSLLRDRLVLVGATAPGLGDRYVTPLSASLG 282 Query: 258 QMPGVEIQANLLNALLHRH 276 PGVEIQAN+LN LL + Sbjct: 283 TTPGVEIQANILNGLLQQR 301 >CC3327_1 Non COG Length = 418 Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 178/395 (45%), Gaps = 25/395 (6%) Query: 2 RKGRVRTTYIIQMMVLTFLLVFLLAWSQVAAQMDRYLYDVGLRLFPAAEAGDVVIVAIDK 61 R G R +++ M + LVF + + +++D LYDV R ++IV ID Sbjct: 10 RSGERRLSWLWLAMAAS--LVFAVFAVRPPSRIDNVLYDVLTRANAHPADDSILIVDIDD 67 Query: 62 KSLETLGRWPFSRSQHAALIRRICDQKPKVIGLDILFSEESHGD-EDAQLAHAMEQCGRV 120 +SL +G WP+ R HA ++ ++ K I D+LFS+ S +D L A+ + GRV Sbjct: 68 RSLARMGAWPWGRDTHARMVDQLTQAGAKTIVYDVLFSQPSRDPAQDRALGEAIARSGRV 127 Query: 121 VLPVVIEPDQISGG----LSITEPVSVVRSAAAGIGRVGIVLDPDGIARSADIKNGSAGI 176 LP + I GG + +S + AAG+G + D DG+ R + G Sbjct: 128 YLPEFL----IDGGEQAPPRVVGSISEIARGAAGVGLAHVRFDDDGVVRRMAPFEAN-GP 182 Query: 177 LFGEQMMRVAGEASFL--YSDRLKGD--GLYFRFVGGPGSIQSISYADVMEGR-PTISLE 231 +M V A+ D +G+ L F G P + S+A V++G P + Sbjct: 183 SLKPDLMTVVHRATRPPGSPDVTRGNEQTLLISFAGPPSIYRHASFASVLDGEVPRELIA 242 Query: 232 GKYVLVGATAMGLGDFIPTPFSAGSFQMPGVEIQANLLNALLHRHLIAMVP----VGYSS 287 G+ V VG TA GLG PTP + + M GV++QA++L+AL +I VG+S Sbjct: 243 GRTVFVGLTAPGLGPAFPTPVTPDAASMTGVQLQASVLDALRSGRMITPAGPWSRVGFSL 302 Query: 288 LICALLAIVPFCWLRKFSPLTGALASIGWGMLIMLITVLMSPLAGVWVRSASAVISTGGT 347 + LL I P L +IG ++ + + + L +W+ + VI Sbjct: 303 TLLWLLMIG----FMALPPRANLLLTIGLCLVGLAYSAALFWLGHIWLSPITTVIGLQLV 358 Query: 348 VLVWNLGRVHLATQFMRQELASLRTQLGERNESGA 382 L+W GR+ + +ELA +R + R A Sbjct: 359 ALIWGWGRLGQVNDLIGRELARVRAVVRGRGAKPA 393 >CC3327_3 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter vibrioides Length = 227 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 24/229 (10%) Query: 405 QRNDALSFISHDLRSPLSNALLKLSQDTEVDKQG---VSMLIRRSLLLAEQFVGLFRAES 461 QR AL ++HD+RSP ++ L L+ ++ K+ ++ RR+L LA+ FV L RAE Sbjct: 1 QREQALQLLTHDMRSPQTSILALLATTPDLPKETADRIAAYARRTLALADGFVQLARAEV 60 Query: 462 TDSKLNESIDILAISYQAMDSVFEKLASKELRLGRSMPDEPLWVLGDFSLLERAFINLMD 521 T L E +D+ ++ +A+D V+ + +++R+ + + PL VLGD S+L R F+NL+ Sbjct: 61 TPVSL-EPLDLADVAVEAIDEVWPQSLQRKIRIEQVGGEAPLMVLGDRSVLARTFVNLLG 119 Query: 522 NAVNYSPRDSSIQVTLEKRDTH----VRFSVSNVGEIGGEKRE------RLFQKYQRNLH 571 NA+ YSP S+I V L ++ + ++++ G G RE R FQ+++R H Sbjct: 120 NALKYSPSGSTITVNLAEQPSPSGPVACIAIADQGP--GFSREEAATAFRPFQRFERPGH 177 Query: 572 EGGEANPMSNGI--GLFFVKVVAEKHGGEVGLDSEEGI-VRFWISLPLH 617 E SNG+ GL FV+ +HGGEV SE G+ F + LP H Sbjct: 178 ELA-----SNGVGLGLAFVQAAVARHGGEVSCRSEPGVGAEFTVRLPRH 221 >RSc1075_1 [T] COG4252 Predicted transmembrane sensor domain Rso Ralstonia solanacearum Length = 433 Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 124/410 (30%), Positives = 186/410 (45%), Gaps = 55/410 (13%) Query: 27 WSQVAAQMDRYLYDVGLRLFPAAEAGDVVIVAIDKKSLETLGRWPFSRSQHAALIRRICD 86 WS V A++D LYD L L A D+VIVAID +SLE +GRWP+ R++ A L+ R+ Sbjct: 46 WS-VVARLDAALYDTVLSLHGHAPRDDIVIVAIDDQSLEAVGRWPWPRARLAELVARVGA 104 Query: 87 QKPKVIGLDILFSEESHGDE--DAQLAHAMEQCGRVVLPVVIEPDQISGGLSITEPVSVV 144 P+ +G+DIL E D D LA A Q G+V+LP + P++ G P + Sbjct: 105 AHPRAVGVDILLIEPDLTDPEGDRALAAAFAQAGQVILPAL--PERTGQGRVFHYPFLGI 162 Query: 145 RSAAAGIGRVGIVLDPDGIARSADIKNGSAGILFGE---QMMRVAGEA---SFLYSDRLK 198 + + + DPD + R + G G L Q+ R AG A + Sbjct: 163 GTH---VAHIDAAPDPDSVVRGLYLAEGPRGHLLDHLALQLARQAGPALAGDVPRRTEID 219 Query: 199 GDGLYFR------FVGGPGSIQSISYADVMEGR-PTISLEGKYVLVGATAMGLGDFIPTP 251 DG R F G G+ + + +++G P + GK VL+GATA G+ D TP Sbjct: 220 ADGWARRANIGVNFAGPAGTFRHVPALTLLQGGVPADAFSGKLVLIGATASGVSDIFATP 279 Query: 252 FSAGSFQMPGVEIQANLLNALLHRH-----------LIAMVPVGYSSLICALLAIVPFCW 300 S M GVE+ AN LL + L+ ++P+ ++ CALL W Sbjct: 280 TSR---TMSGVEVLANATQTLLDGNAILPASRTVFWLVTLLPLSLTA--CALL------W 328 Query: 301 LRKFSPLTGALASIGWGMLIMLITVLMSPLAGV--WVRSASAVISTGGTVLVWNLGRVHL 358 L LT AL S G +L+ +++ LAG W+ +A++ +W+ + Sbjct: 329 LTPRMALTAALGSAG-----LLLVGVVAALAGWNRWLPPFAALVGPLVLYPLWSWRQQEA 383 Query: 359 ATQFMRQELASLRTQLGERNESGAL-----DLEEKIYLIQEAKSKLRKLE 403 A +F+R EL L + G +G L L+ + + KLR L Sbjct: 384 ALRFLRDELHRLAREPGLLAGTGPLAQTGRTLDAHMDAVASLTDKLRGLR 433 >RSc1075_3 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 231 Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 12/216 (5%) Query: 400 RKLEEQRNDALSFISHDLRSPLSN--ALLKLSQDT------EVDKQGVSMLIRRSLLLAE 451 R+ E R +AL FISHD+RSP S AL++L +D E + L R+L LA+ Sbjct: 1 RQAERHREEALRFISHDMRSPQSAILALIELQRDAGRALGHEALLARIQQLSSRTLELAD 60 Query: 452 QFVGLFRAESTDSKLNESIDILAISYQAMDSVFEKLASKELRLGRSMPDEPLWVLGDFSL 511 F+ L R ES + KL + +D++ + A D V+ ++ + R D V G+ + Sbjct: 61 AFIDLARVESQELKLTD-VDLVGLVLDAADEVWALANHHQIEV-RVDADLEASVRGEPRM 118 Query: 512 LERAFINLMDNAVNYSPRDSSIQVTLEKRDTHVRFSVSNVG-EIGGEKRERLFQKYQRNL 570 L RA +NL++NA+ +SPR +++ V + SV++ G I E + +LFQ ++R L Sbjct: 119 LVRALVNLVNNAIKFSPRGTTVTVAVRGDADSFAVSVADQGVGIAAEDQAQLFQPFRR-L 177 Query: 571 HEGGEANPMSNGIGLFFVKVVAEKHGGEVGLDSEEG 606 HE P +G+GL FVK V E+HGG + + S G Sbjct: 178 HEAVADAPSGSGLGLVFVKTVVERHGGRIAVRSVPG 213