BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0104.p (811 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 525 e-148 DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 391 e-108 lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 338 4e-92 CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 337 1e-91 CT708 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family... 332 2e-90 >PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Pae Pseudomonas aeruginosa Length = 663 Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust. Identities = 320/687 (46%), Positives = 414/687 (60%), Gaps = 63/687 (9%) Query: 140 FWADQAPRLQQQGWTLRVRPGFAHESVPVTAWRFIVSSENGELSAREVAAPLQPRAFSSE 199 F D PRL+QQGW + +R FA++ P+ AW +E E R+ Sbjct: 13 FMQDDLPRLRQQGWFIDIRADFAYDLTPIDAW----YAEVEEADDRQ------------- 55 Query: 200 IFDGLDPSGRWL-LAMGIEVDGQTLDVAPMVADLLRRDPRWADAQQVERM--DSHAVISL 256 W L +GI+V GQ + + P + +L+RR P D + + R + V+ L Sbjct: 56 ----------WFELELGIQVAGQRVSLLPALTELIRRSPALLDPRALARHADEEQLVLRL 105 Query: 257 RAPGGRRIDAMAGPLKAVVLSLLDLLVDLKRKDGPLQLSPWDAHRLDSLQADLQALQGGA 316 R+ G LK V+ +L D + L+L DA RL ADL L Sbjct: 106 ELNPPLRVALPFGRLKPVLAALSDFYLGDPEPQRKLRLGAPDAARL----ADLDEL---- 157 Query: 317 PWYMSGAAGVLQLAQRLRAAGSVQPVAPPAGLGLTLRGYQLQGVAWMQYLRQHGLAGILA 376 P G + A+RLR+ +P PP GL LR YQL+G++WMQ LR+ G+LA Sbjct: 158 PLAWEGGDNLRDFARRLRSF-QARPATPPQGLRAELRPYQLEGLSWMQTLRELDSGGVLA 216 Query: 377 DDMGLGKTAQVLAHLLIEQQAGRLDLPALVVVPTSLLFNWQQEAQRIAPALRVQVLHGED 436 DDMGLGKT Q LAH+L+E+QAGRLD PALVV+PTSL+ NW EA+R AP LRV LHG Sbjct: 217 DDMGLGKTLQSLAHVLLEKQAGRLDTPALVVMPTSLIPNWLDEAERFAPDLRVLALHGAG 276 Query: 437 RARHVSAIAQGQADLVLTTYPLLWRDLDLLLSLRFHLLVLDEAQTIKNAAARSTAAARRL 496 R R + I + DLVLTTY LL RD L RFHLL+LDEAQ IKNA ++ AAR L Sbjct: 277 RRRDFARI--DEHDLVLTTYALLPRDAAELGKRRFHLLILDEAQNIKNATTKAAVAAREL 334 Query: 497 HARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRKPIEQQG---------- 546 ARHRLC+TGTPLENHLGELWS FHFLMPG+LGDAR FA+ +R PIE+ G Sbjct: 335 AARHRLCLTGTPLENHLGELWSLFHFLMPGWLGDARQFAQDYRTPIEKHGDEARLSHLAA 394 Query: 547 ------WGFXKQDVLQELPPRIEIVERLQLQGRQRELYESVRIAADKQVRRALERRGLGS 600 K+ V ELPP+ E + ++L QRELYE+VR+A D++VR + RRGL Sbjct: 395 RLRPFLLRRTKEQVASELPPKSEFTQFVELSEAQRELYETVRLALDRKVREEIARRGLAR 454 Query: 601 SQVSVMDALLKLRQVCCDPYLLKQ----GRMPRGLERAKIEWLRDTLPALVEEGRRILLF 656 S++ +++ALLKLRQVCCD LL++ R R L K+ +L D L L+ EGRR+LLF Sbjct: 455 SRIVILEALLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDELIAEGRRVLLF 514 Query: 657 SQFTSMLTLIEAELQALQLPCLMLTGDTEPAARSGVISRFQQGDVPLMLVSLKVGGVGLN 716 SQFTSML LIE L+ + ++LTG+T R + RFQ G VP+ L+SLK GGVGLN Sbjct: 515 SQFTSMLALIEDALRQRGVDYVLLTGETRD--RRAPVQRFQSGKVPVFLISLKAGGVGLN 572 Query: 717 LTAADTVVLADPWWNPAVEEQAIARAHRLGQTRQVFVYKLVIEGSIEERLLELQTRKSAL 776 LTAADTV+ DPWWNPAVE QA RA+R+GQ + VFVY+L+ G++EE++ LQ K+AL Sbjct: 573 LTAADTVIHYDPWWNPAVENQASDRAYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAAL 632 Query: 777 AEGMLGRDDTATIKFGEEELQALLAPL 803 A+G+ + K E ++ AL APL Sbjct: 633 ADGLFSEGNGDGWKLDEADIDALFAPL 659 >DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Dra Deinococcus radiodurans Length = 600 Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust. Identities = 212/415 (51%), Positives = 275/415 (66%), Gaps = 20/415 (4%) Query: 383 KTAQVLAHLLIEQQAGRLDLPALVVVPTSLLFNWQQEAQRIAPALRVQVLHGEDRARHVS 442 T Q LAHLL E++ GR D P+LV+ PTS++ NWQ EA R P L+V VLHG+DR Sbjct: 157 NTLQTLAHLLKEKEEGRADRPSLVIAPTSVIGNWQAEAARFTPDLKVLVLHGKDRHADFE 216 Query: 443 AIAQGQADLVLTTYPLLWRDLDLLLSLRFHLLVLDEAQTIKNAAARSTAAARRLHARHRL 502 I AD+VLTTYPLL RD+D L +HL++LDEAQ IKN + AA L ARHRL Sbjct: 217 KIPH--ADVVLTTYPLLPRDIDELRQHEYHLVILDEAQNIKNNKTAAAKAAGSLGARHRL 274 Query: 503 CMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRKPIEQQG---------------- 546 +TGTPLENHLGELWSQF+FL PG L D ++F +L+R PIE++G Sbjct: 275 ALTGTPLENHLGELWSQFNFLAPGLLHDEKTFQKLYRTPIEKRGDTARQAALSARVRPFI 334 Query: 547 WGFXKQDVLQELPPRIEIVERLQLQGRQRELYESVRIAADKQVRRALERRGLGSSQVSVM 606 K+DV +ELPP+ EI R+ L+G QR+LYE+VR+ +VR L RGL S ++++ Sbjct: 335 LRREKRDVARELPPKTEIPVRVTLEGDQRDLYETVRVTMQSRVREELAARGLARSTIAIL 394 Query: 607 DALLKLRQVCCDPYLLKQGRMPRGLERAKIEWLRDTLPALVEEGRRILLFSQFTSMLTLI 666 DALLKLRQ DP L+K AK++WL LP +VEEGRR+L+FS F ++L + Sbjct: 395 DALLKLRQAVTDPRLVKLEAAREVQGNAKLDWLETNLPQMVEEGRRVLIFSGFATLLGHL 454 Query: 667 EAELQALQLPCLMLTGDTEPAARSGVISRFQQGDVPLMLVSLKVGGVGLNLTAADTVVLA 726 E L+ +P +TG T+ R I FQ G+ + L++LK GGVGLNLTAADTV+ Sbjct: 455 EEFLKREGIPYSKITGQTKD--RQKQIDAFQAGETHVFLITLKAGGVGLNLTAADTVIHY 512 Query: 727 DPWWNPAVEEQAIARAHRLGQTRQVFVYKLVIEGSIEERLLELQTRKSALAEGML 781 DPWWNPA E+QA RA+R+GQ + VFVYKL+ GS+EER+L+LQ RK+ALA G+L Sbjct: 513 DPWWNPAAEDQATDRAYRIGQDKPVFVYKLIAAGSVEERILDLQARKAALARGVL 567 >lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Lin Listeria innocua Length = 1072 Score = 338 bits (866), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 185/459 (40%), Positives = 263/459 (57%), Gaps = 20/459 (4%) Query: 345 PAGLGLTLRGYQLQGVAWMQYLRQHGLAGILADDMGLGKTAQVLAHLLIEQQAGRLDLPA 404 P GL LR YQL G WM+ L ++ L GILADDMGLGKT Q ++ L E + P Sbjct: 609 PKGLKAELRDYQLTGFEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEENPNLKPV 668 Query: 405 LVVVPTSLLFNWQQEAQRIAPALRVQVLHGEDRARHVSAIAQGQADLVLTTYPLLWRDLD 464 L+V P SLL+NWQ E ++ AP + V VLHG +AR + L +YP L +D+ Sbjct: 669 LIVTPASLLYNWQSELEKFAPEIPVTVLHGTKQARMAEMEEIKHGHVYLISYPSLRQDII 728 Query: 465 LLLSLRFHLLVLDEAQTIKNAAARSTAAARRLHARHRLCMTGTPLENHLGELWSQFHFLM 524 + F +++DE+Q IKN +++ A R L H ++GTPLEN + ELW+ F LM Sbjct: 729 HFADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLM 788 Query: 525 PGFLGDARSFARLWRKPIEQQGWGF----XKQDVLQELPPRIEIVERLQLQGRQRELYES 580 PGF R F + + I + F KQDV++ELP +IE +L Q+ +Y Sbjct: 789 PGFFPSLRKFKEIPYENIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIY-- 846 Query: 581 VRIAADKQVRRALERRGLGSSQ--VSVMDALLKLRQVCCDPYLLKQGRMPRGLERAKIEW 638 +A ++++ LE +S+ + ++ L +LRQ+CCDP L + E K+ Sbjct: 847 --LAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQG---ESGKLLQ 901 Query: 639 LRDTLPALVEEGRRILLFSQFTSMLTLIEAELQALQLPCLMLTGDTEPAARSGVISRFQQ 698 L DT+ E G+RIL+FSQFT ML +I +L+ P + G T R +++ F + Sbjct: 902 LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNE 961 Query: 699 GDVPLMLVSLKVGGVGLNLTAADTVVLADPWWNPAVEEQAIARAHRLGQTRQVFVYKLVI 758 G+ + L+SLK GG GLNL ADTV+L D WWNPAVEEQA RAHR+GQ R V V++++ Sbjct: 962 GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMIT 1021 Query: 759 EGSIEERLLELQTRKSALA-------EGMLGRDDTATIK 790 +G+IEER+ +LQ +K AL E MLG+ +T IK Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQPGEQMLGKLNTEEIK 1060 >CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cpn Chlamydophila pneumoniae CWL029 Length = 1166 Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 186/505 (36%), Positives = 285/505 (56%), Gaps = 28/505 (5%) Query: 317 PWYMSGAAGVLQLAQRLRAAGSVQPVAPPAGLGLTLRGYQLQGVAWMQYLRQHGLAGILA 376 P S + ++++ +++R P + TLR YQ +GV W++ LR+ L GILA Sbjct: 667 PVNFSMSERLIEIQKQIRGEIEFDFQDVPQQIQATLRSYQTEGVHWLERLRKMHLNGILA 726 Query: 377 DDMGLGKTAQVLAHLL---IEQQAGRLDLPALVVVPTSLLFNWQQEAQRIAPALRVQVLH 433 DDMGLGKT Q + + +E+ +G +L+V PTSL++NW++E ++ P R V+ Sbjct: 727 DDMGLGKTLQAIIAVTQSKLEKGSG----CSLIVCPTSLVYNWKEEFRKFNPEFRTLVID 782 Query: 434 GEDRARHVSAIAQGQADLVLTTYPLLWRDLDLLLSLRFHLLVLDEAQTIKNAAARSTAAA 493 G R A D+ +T+Y LL +D++L S RF +VLDEA IKN R+ + Sbjct: 783 GVPSQRRKQLTALADRDVAITSYNLLQKDVELYKSFRFDYVVLDEAHHIKNRTTRNAKSV 842 Query: 494 RRLHARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLW--------------- 538 + + + HRL +TGTP+EN L ELWS F FLMPG L F + Sbjct: 843 KMIQSDHRLILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKADNMV 902 Query: 539 --RKPIEQQGWGFXKQDVLQELPPRIEIVERLQLQGRQRELYESVRIAADKQVRRALERR 596 +K + K+DVL++LPP EI+ L Q+ELY+S +A +++ R +++ Sbjct: 903 ALKKKVSPFILRRMKEDVLKDLPPVSEILYHCHLTESQKELYQSYAASAKQELSRLVKQE 962 Query: 597 GLGSSQVSVMDALLKLRQVCCDPYLLKQGRMPRGLERAKIEWLRDTLPALVEEGRRILLF 656 G + V+ L +L+Q+CC P + + P + AK + L D L +LV+ G + ++F Sbjct: 963 GFERIHIHVLATLTRLKQICCHPAIFAKD-APEPGDSAKYDMLMDLLSSLVDSGHKTVVF 1021 Query: 657 SQFTSMLTLIEAELQALQLPCLMLTGDTEPAARSGVISRFQQG-DVPLMLVSLKVGGVGL 715 SQ+T ML +I+ +L++ +P + L G T+ R ++++F + + + L+SLK GG GL Sbjct: 1022 SQYTKMLGIIKKDLESRGIPFVYLDGSTK--NRLDLVNQFNEDPSLLVFLISLKAGGTGL 1079 Query: 716 NLTAADTVVLADPWWNPAVEEQAIARAHRLGQTRQVFVYKLVIEGSIEERLLELQTRKSA 775 NL ADTV+ D WWNPAVE QA R HR+GQ+R V YKLV +IEE++L LQ RK + Sbjct: 1080 NLVGADTVIHYDMWWNPAVENQATDRVHRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKS 1139 Query: 776 LAEGMLGRDDTATIKFGEEELQALL 800 L + ++ DD K EE+ LL Sbjct: 1140 LVKKVINSDDEVVSKLTWEEVLELL 1164 >CT708 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Ctr Chlamydia trachomatis Length = 1163 Score = 332 bits (851), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/505 (36%), Positives = 281/505 (55%), Gaps = 28/505 (5%) Query: 317 PWYMSGAAGVLQLAQRLRAAGSVQPVAPPAGLGLTLRGYQLQGVAWMQYLRQHGLAGILA 376 P S + ++ +++R + P+ + TLRGYQ +GV W++ LR+ L GILA Sbjct: 664 PVNFSMTEDLAEIQKQIRGEVDFEFQEVPSQIQATLRGYQKEGVHWLERLRKMHLNGILA 723 Query: 377 DDMGLGKTAQVLAHLL---IEQQAGRLDLPALVVVPTSLLFNWQQEAQRIAPALRVQVLH 433 DDMGLGKT Q + + +E+ G +L++ PTSL++NW++E ++ P + V+ Sbjct: 724 DDMGLGKTLQTIIAVTQSRLEKGGG----CSLIICPTSLVYNWKEEFRKFNPEFKTLVVD 779 Query: 434 GEDRARHVSAIAQGQADLVLTTYPLLWRDLDLLLSLRFHLLVLDEAQTIKNAAARSTAAA 493 G R + + D+ +T+Y LL +D+D+ F +VLDEA IKN R+ + Sbjct: 780 GIPSQRRKQLASLEEYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHHIKNRTTRNAKSV 839 Query: 494 RRLHARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLW--------------- 538 + + A HRL +TGTP+EN L ELWS F FLMPG L F + Sbjct: 840 KMIRACHRLILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRIGNYMGNKADNVE 899 Query: 539 --RKPIEQQGWGFXKQDVLQELPPRIEIVERLQLQGRQRELYESVRIAADKQVRRALERR 596 R+ + K+DVL++LPP EI+ L QRELY+S +A +++ R +++ Sbjct: 900 ALRRKVAPFILRRMKEDVLEDLPPVSEILYHCHLTESQRELYQSYAASARQELSRLVKQE 959 Query: 597 GLGSSQVSVMDALLKLRQVCCDPYLLKQGRMPRGLERAKIEWLRDTLPALVEEGRRILLF 656 G + V+ L +L+Q+CC P + + P + AK + L D L +LV+ G + ++F Sbjct: 960 GFERIHIHVLATLTRLKQICCHPAIFAKD-TPEPGDSAKYDMLMDLLSSLVDSGHKTVVF 1018 Query: 657 SQFTSMLTLIEAELQALQLPCLMLTGDTEPAARSGVISRFQQG-DVPLMLVSLKVGGVGL 715 SQ+T ML +I +L+A +P + L G T+ R ++ +F + + + LVSLK GG GL Sbjct: 1019 SQYTKMLGIIRQDLEAKGIPFVYLDGSTK--NRLEIVQQFNEDPGLLVFLVSLKAGGTGL 1076 Query: 716 NLTAADTVVLADPWWNPAVEEQAIARAHRLGQTRQVFVYKLVIEGSIEERLLELQTRKSA 775 NL ADTV+ D WWNPAVE QA R HR+GQ+R V YKLV +IEE++L LQ RK Sbjct: 1077 NLVGADTVIHYDMWWNPAVENQATDRVHRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKG 1136 Query: 776 LAEGMLGRDDTATIKFGEEELQALL 800 L + ++ DD K EE+ LL Sbjct: 1137 LVKKVINSDDEVVSKLTWEEVLELL 1161