BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0083.p         (81 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ...   109   1e-24
AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ...   108   2e-24
YPO3254 [E] COG1126 ABC-type polar amino acid transport system, ...   106   1e-23
AGl381 [E] COG1126 ABC-type polar amino acid transport system, A...   105   2e-23
SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ...   102   2e-22

>AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 243

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 1   MXDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG 60
           + DEVTSALDP+L GEVL+VME++AA GMTM+LVTHEM+FA+ VA ++++MHQGRVWE G
Sbjct: 161 LFDEVTSALDPELVGEVLKVMEEMAAQGMTMVLVTHEMSFARNVATKLVFMHQGRVWEQG 220

Query: 61  -PGDMLDHPHTPELQAFLA 78
            P  +   P TPEL++F+ 
Sbjct: 221 DPKRLFADPQTPELKSFIG 239


>AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 243

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 1   MXDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG 60
           + DEVTSALDP+LTGEVL VME LA  GMTMLLVTHEM+FA+ VA   ++MHQG++WE+G
Sbjct: 161 LFDEVTSALDPELTGEVLLVMEQLAREGMTMLLVTHEMSFARSVAHVTVFMHQGKIWEMG 220

Query: 61  PGDML-DHPHTPELQAFLA 78
               L + P TPELQAFL+
Sbjct: 221 ASKQLFEKPQTPELQAFLS 239


>YPO3254 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Ype Yersinia pestis
          Length = 248

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 1   MXDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG 60
           + DE+TSALDP+L GEVL+V+E LAA GMT++LVTHEMNFA+ V DR+++MHQGRVWE G
Sbjct: 161 LCDEITSALDPELVGEVLKVLEQLAAEGMTLILVTHEMNFAREVGDRVVFMHQGRVWEQG 220

Query: 61  PGDML-DHPHTPELQAFLAA 79
               L   P T EL+ F+++
Sbjct: 221 ESRALFADPQTRELKQFISS 240


>AGl381 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 243

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 1   MXDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG 60
           + DEVTSALDP+LT EVL VME+LA  GMTM+LVTHEM FA+RVA   I+MH+G++WE G
Sbjct: 161 LFDEVTSALDPELTEEVLTVMENLAKGGMTMILVTHEMAFARRVATETIFMHKGKIWEQG 220

Query: 61  -PGDMLDHPHTPELQAFLAADL 81
              ++  +P TPEL+ F+ AD+
Sbjct: 221 RSAELFANPQTPELRQFVKADV 242


>SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Sme Sinorhizobium meliloti
          Length = 243

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 1   MXDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG 60
           + DEVTSALDP+LTGEVL V+E LA +GMTM+LVTHEM FA+RVA+R I+M  G + E G
Sbjct: 161 LFDEVTSALDPELTGEVLAVIEKLARDGMTMILVTHEMGFARRVANRTIFMRDGIIHEEG 220

Query: 61  P-GDMLDHPHTPELQAFLAADL 81
           P  +    P TPEL+AFL A++
Sbjct: 221 PSAEFFSSPKTPELRAFLHAEV 242