BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0073.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZbaeR [TK] COG0745 Response regulators consisting of a CheY-like... 261 1e-69 ECs2887 [TK] COG0745 Response regulators consisting of a CheY-li... 260 2e-69 baeR [TK] COG0745 Response regulators consisting of a CheY-like ... 259 4e-69 STM2131 [TK] COG0745 Response regulators consisting of a CheY-li... 256 3e-68 RSp1161 [TK] COG0745 Response regulators consisting of a CheY-li... 246 3e-65 >ZbaeR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 240 Score = 261 bits (667), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/223 (61%), Positives = 164/223 (73%), Gaps = 5/223 (2%) Query: 18 ILIVEDEPKLAELLQKYLAVAGYTSRHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNASV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRR-CKP 130 Query: 138 QRSAQAEPLPQGSSPLIIDETRHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSREQLLN 197 QR Q + SPLIIDE R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLN Sbjct: 131 QRELQQQ---DAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Query: 198 HLHDDDRSVTDRAIDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 240 HL+DD R VTDR ID+HIKNLRRKLE + I+AVYGVGY Sbjct: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >ECs2887 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 240 Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/223 (61%), Positives = 164/223 (73%), Gaps = 5/223 (2%) Query: 18 ILIVEDEPKLAELLQKYLAVAGYTSRHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNASV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRR-CKP 130 Query: 138 QRSAQAEPLPQGSSPLIIDETRHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSREQLLN 197 QR Q + SPLIIDE R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLN Sbjct: 131 QRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Query: 198 HLHDDDRSVTDRAIDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 240 HL+DD R VTDR ID+HIKNLRRKLE + I+AVYGVGY Sbjct: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >baeR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 240 Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/223 (61%), Positives = 164/223 (73%), Gaps = 5/223 (2%) Query: 18 ILIVEDEPKLAELLQKYLAVAGYTSRHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNASV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRR-CKP 130 Query: 138 QRSAQAEPLPQGSSPLIIDETRHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSREQLLN 197 QR Q + SPLIIDE R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLN Sbjct: 131 QRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Query: 198 HLHDDDRSVTDRAIDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 240 HL+DD R VTDR ID+HIKNLRRKLE + I+AVYGVGY Sbjct: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >STM2131 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 240 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 136/223 (60%), Positives = 163/223 (73%), Gaps = 5/223 (2%) Query: 18 ILIVEDEPKLAELLQKYLAVAGYTSRHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y + GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNASV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRR-CKP 130 Query: 138 QRSAQAEPLPQGSSPLIIDETRHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSREQLLN 197 QR Q + SPL+IDE+R QAS G+ L+LTP E RLLKT + PG+VFSREQLLN Sbjct: 131 QRELQQQ---DAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLN 187 Query: 198 HLHDDDRSVTDRAIDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 240 HL+DD R VTDR ID+HIKNLRRKLE + I+AVYGVGY Sbjct: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >RSp1161 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 246 bits (629), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 129/223 (57%), Positives = 159/223 (71%), Gaps = 9/223 (4%) Query: 18 ILIVEDEPKLAELLQKYLAVAGYTSRHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKLA L+ YL A Y + V G A+ VR P+L+LLD+MLPG DG EI Sbjct: 2 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNASV 137 CR++R FSD+P++M+TAR EE DRL GLELGADDYI K PFSPRE+VAR+K++LRR V Sbjct: 62 CREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICK-PFSPRELVARIKTILRR---V 117 Query: 138 QRSAQAEPLPQGSSPLIIDETRHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSREQLLN 197 QRS Q S L ID T + A++RG+ L+LTP+E RLL A APG++ SR LL Sbjct: 118 QRSG-----AQSDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLE 172 Query: 198 HLHDDDRSVTDRAIDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 240 ++DD R VTDR +DTH+KNLRRK+E PG I +VYGVGY Sbjct: 173 QIYDDHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGY 215