BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0072.p (516 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 389 e-107 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 355 2e-97 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 353 5e-97 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 351 2e-96 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 351 2e-96 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/517 (45%), Positives = 346/517 (66%), Gaps = 10/517 (1%) Query: 4 FNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 ++++I +L +FA V+ L + + I+ L N + + I + I+ + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 64 PRMR--ISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFSK 121 + +S L ++T TP ++ + + A+ E ++ + K +++ Sbjct: 63 YKANGILSNLLLVT--TPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFD 120 Query: 122 SFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSD-- 179 + +AY +K + A +EARA+++GD ++ +D+++ + AG M D Sbjct: 121 ARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVD-HQAGEMEHDVS 179 Query: 180 QTASDVFNSA-RAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDI 238 + A+ N+ + ++ +LA ++ IA G + R ++RP+N A+ +AE VAQG+LT + Sbjct: 180 EAAAQGANAKIQMIVLAVLATLLAIATGAF--ITRTITRPINHAMHLAEAVAQGNLTHLL 237 Query: 239 RSDSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGS 298 D++DE G L+ +L+ M ++L+ IVS+VR GTD IT AS E+A+GN+DLSSRTE+QA S Sbjct: 238 EVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASS 297 Query: 299 LEETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRI 358 LEETA+AME+LT+TVKQNADNA++A++LA++AS VA++GG+ V + +QTM I SS +I Sbjct: 298 LEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKI 357 Query: 359 ADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LI Sbjct: 358 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALI 417 Query: 419 DDSVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMD 478 +DSV V G+ VE AG + +VVA ++ VT++V+EISA+S EQS GIE+IN AITQMD Sbjct: 418 EDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMD 477 Query: 479 EVTQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKIQ 515 + TQ+NA+LVEE+A AAQ+LQDQA +L+ +VS FK+ Sbjct: 478 KATQENASLVEESATAAQALQDQANQLADMVSTFKLH 514 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 355 bits (910), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 189/296 (63%), Positives = 232/296 (78%) Query: 217 RPLNEAVSVAERVAQGDLTVDIRSDSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITT 276 PLN ++ + +A GDLT +I ++E G L SL+ M L IV EVR G DAI + Sbjct: 220 HPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYS 279 Query: 277 ASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDVASQ 336 + EIA GN DLS+RTE+QA SLEETA++ME+LTATVKQNA+NARQA+QLA SAS+ A + Sbjct: 280 GASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQK 339 Query: 337 GGEVVGQVVQTMEGITESSNRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 396 GG+VV VVQTM I SS +IADI +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 340 GGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 399 Query: 397 ASEVRSLAQRSASAAKEIKQLIDDSVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEI 456 A EVR+LAQRSA AAKEIK LIDDSV +V GS LVE AG TM ++V +V RVTD++ EI Sbjct: 400 AGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEI 459 Query: 457 SAASSEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAGRLSQVVSVF 512 ++AS EQS GI++I +A+ +MD VTQQNA+LVEE+A+AA SL++QA L+Q +SVF Sbjct: 460 ASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVF 515 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 353 bits (906), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 203/308 (65%), Positives = 248/308 (80%), Gaps = 4/308 (1%) Query: 211 VARAVSRPLNEAVSVAERVAQGDLTVDI----RSDSKDETGMLMHSLRAMNDSLNKIVSE 266 + R + RPL A+ V ER+A GDL + R+ +DET LMH++ +M SL K+V + Sbjct: 214 LGRTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVGQ 273 Query: 267 VRYGTDAITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQL 326 VR G+D+I +A+++IA GN DLS RTE+QA SLEETAS+MEELT+ VKQNADNARQA+ L Sbjct: 274 VRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTL 333 Query: 327 AASASDVASQGGEVVGQVVQTMEGITESSNRIADIITVIDGIAFQTNILALNAAVEAARA 386 A +ASDVA +GGEVVG+VV+TM GI SS +IADII VI+GIAFQTNILALNAAVEAARA Sbjct: 334 AVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAARA 393 Query: 387 GEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVQKVGAGSQLVERAGATMSEVVASV 446 GEQGRGFAVVA EVRSLAQRSA AAKEIK+LI DSV +V GS+LV AG + EVV +V Sbjct: 394 GEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVAV 453 Query: 447 KRVTDVVAEISAASSEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAGRLS 506 KRVTD++ EISAAS EQS+GIE++N+A+ QMDEVTQQNAALVE+AAAAA+SL+ QA L Sbjct: 454 KRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEQAAAAAESLEAQAEALR 513 Query: 507 QVVSVFKI 514 Q VS F++ Sbjct: 514 QAVSAFRV 521 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 351 bits (901), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 238/492 (48%), Positives = 320/492 (65%), Gaps = 30/492 (6%) Query: 39 NQASTDMATNWLPTIKAAQSIQASLPRMRISELQMITAATPAEREDALKAIKSRLDILAK 98 N A + +N L + +A +A L + R + + I PA+ DA+ I++++ K Sbjct: 36 NAALKETYSNNLASTRALGLAEAKLAQARTALDRAIFETDPAKTTDAISRIQAQIGNSEK 95 Query: 99 QRATYE--AQISEAEEKLAYEK-------FSKSFAAYLEIDKKLAEISGAGKEEEARAIF 149 A Y + EEK+A E + AA +E K+ G ++ AR + Sbjct: 96 AWAEYLNLPFSTPEEEKVAGEAKKQRDLIIKDNIAAAVEALKR-------GDKDAARQLA 148 Query: 150 KGDSNKTFRSMLESMDEIIKINDAGSMRSDQTASDVFNSARAWIIGLLAAIVVI------ 203 FR+ D + I + ++ ++ +++++ GL+ V++ Sbjct: 149 VEQIPYNFRTYASQSDRLNAIQT-------EVSAALYEASQSFFKGLVWTFVIVIAAGLA 201 Query: 204 -AFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIRSDSKDETGMLMHSLRAMNDSLNK 262 A G L ++RA+S PL E + +A G+LT D+R S+DE G+LM L+ M D L Sbjct: 202 LAAGCYLILSRAISLPLAEMLVHFREIASGNLTTDVRVRSRDEMGVLMEGLQQMQDKLKA 261 Query: 263 IVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQ 322 V VR+G+++I +A+Q+IA GN +LS RTEEQA SLEETAS+MEELT+ VKQNADNARQ Sbjct: 262 TVLTVRHGSESIASATQQIAAGNTNLSQRTEEQASSLEETASSMEELTSIVKQNADNARQ 321 Query: 323 ANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIADIITVIDGIAFQTNILALNAAVE 382 A+ LA +AS +A QGG VV VV TM I+ESS +I DII VI+GIAFQTNILALNAAVE Sbjct: 322 ASTLAENASGIAMQGGAVVQDVVTTMAQISESSRKITDIIAVIEGIAFQTNILALNAAVE 381 Query: 383 AARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVQKVGAGSQLVERAGATMSEV 442 AARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI+DS +V +GS LV RAG TM E+ Sbjct: 382 AARAGEQGRGFAVVAGEVRTLAQRSAGAAKEIKSLIEDSATRVESGSSLVARAGKTMDEI 441 Query: 443 VASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQA 502 V +VKRVTD++ EISA S+EQSTGIE+IN A+TQMD+VTQQNAALVE+AAAAAQ+L++QA Sbjct: 442 VVAVKRVTDIMGEISAGSAEQSTGIEQINEAVTQMDDVTQQNAALVEQAAAAAQALEEQA 501 Query: 503 GRLSQVVSVFKI 514 L + VSVF++ Sbjct: 502 DELRRAVSVFRV 513 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 351 bits (901), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 237/534 (44%), Positives = 328/534 (61%), Gaps = 47/534 (8%) Query: 4 FNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 F + I +L L A V +L V++G + ++ N +QA+ Sbjct: 2 FRGMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANT-----------------RVQATY 44 Query: 64 PRMRISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFSKSF 123 E+Q+ A AE + ++ + + LD A + ++ K S+ Sbjct: 45 ------EMQLAGAVALAESDASMLSFRLVLDRAAMDIKAPSLGKTLERARMFLAKSDASW 98 Query: 124 AAYLEI-----DKKLAEISGA--------GKEEEARAIFKGDSNKTFRSMLESMDEII-- 168 Y + ++KLA+ + A G + +AI GD+ +T ++++E+M + Sbjct: 99 KRYRALPSTPDERKLADEADALRTVFLRDGAQALMQAIQAGDAERTSQTVMEAMPALYRP 158 Query: 169 ---KINDAGSM-----RSDQTASDVFNSARAWIIGLLAAIVVIAFGL-ALAVARAVSRPL 219 K+ M R+ A + + + L + ++ GL ++ R+++ PL Sbjct: 159 LGDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVGGGLLTWSLRRSITVPL 218 Query: 220 NEAVSVAERVAQGDLTVDIRSDSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQ 279 N A+ AE + +GDLT I D DETG ++ +L+ M +SL +V +VR G+DAI +A+Q Sbjct: 219 NRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASATQ 278 Query: 280 EIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDVASQGGE 339 +IA GN DLS RTE+QA SLEETAS+ME+LT VKQNAD+ARQA+ LA +ASD+A +GGE Sbjct: 279 QIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGGE 338 Query: 340 VVGQVVQTMEGITESSNRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 399 VVG+VV+TM GI +SS +IADII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA E Sbjct: 339 VVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGE 398 Query: 400 VRSLAQRSASAAKEIKQLIDDSVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAA 459 VRSLAQRSA AAKEIK LI DSV +V +G+ LV AG + EVV +VKRVT ++ EISAA Sbjct: 399 VRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISAA 458 Query: 460 SSEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFK 513 S QS GI ++N+A+TQMDE TQQNAALVE+AAAAA SLQ+QA L V+ F+ Sbjct: 459 SDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFR 512