BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0065.p         (69 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20172 [C] COG3474 Cytochrome c2 Sme Sinorhizobium meliloti          68   5e-12
RC0337 Non COG                                                         68   5e-12
AGl976 [C] COG3474 Cytochrome c2 Atu Agrobacterium tumefaciens s...    67   1e-11
AGl1651 [C] COG3474 Cytochrome c2 Atu Agrobacterium tumefaciens ...    65   5e-11
mll1048 [C] COG3474 Cytochrome c2 Mlo Mesorhizobium loti               63   1e-10

>SMb20172 [C] COG3474 Cytochrome c2 Sme Sinorhizobium meliloti
          Length = 136

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 1   VIGRKAGSTTDFKYSPAM---ASAGFIWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQI 57
           +IGR AG    + YSPAM   A AG  WT +K+  FL +P   +PG KM F G+  D++ 
Sbjct: 66  IIGRSAGKAEGYAYSPAMSKAAEAGLTWTPEKIAEFLTSPKGFLPGTKMTFAGLRKDQER 125

Query: 58  DDILAYLRTF 67
            DI+AYL TF
Sbjct: 126 ADIIAYLATF 135


>RC0337 Non COG
          Length = 175

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%)

Query: 1   VIGRKAGSTTDFKYSPAMASAGFIWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQIDDI 60
           V GR   S  D+KYSPA++  G +W +D L AFL  PS   PG KM F GI   + I D+
Sbjct: 105 VTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADV 164

Query: 61  LAYLRTF 67
           + +L+T+
Sbjct: 165 ILFLKTY 171


>AGl976 [C] COG3474 Cytochrome c2 Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 139

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 1   VIGRKAGSTTDFKYSPAMASAG---FIWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQI 57
           +IGR AG   D+ YS AM  AG    +WT ++LR FL AP   +PGNKM   GI   + +
Sbjct: 64  IIGRAAGGVPDYTYSSAMKKAGEDGLVWTPEELRDFLSAPKKKIPGNKMALAGISKPEDL 123

Query: 58  DDILAYLRT 66
           D+++AY+ +
Sbjct: 124 DNLIAYIES 132


>AGl1651 [C] COG3474 Cytochrome c2 Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 166

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 1   VIGRKAGSTTDF-KYSPAM---ASAGFIWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQ 56
           V+GR   +  D+  YS A+    +AG +WTED+L+ F+ +P   +PGN MRF+G+ S+  
Sbjct: 92  VVGRPMAAVADYGHYSQALKDAGAAGRVWTEDELQKFIASPKKAIPGNAMRFFGLWSETD 151

Query: 57  IDDILAYLRT 66
           I D++AYL+T
Sbjct: 152 IVDLIAYLKT 161


>mll1048 [C] COG3474 Cytochrome c2 Mlo Mesorhizobium loti
          Length = 134

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1   VIGRKAGSTTDFKYSPAMASAG---FIWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQI 57
           VIGR AG+  DFKYS AM +AG     W E  L  +L  P  +V G KM F G+ +D  +
Sbjct: 63  VIGRTAGTHPDFKYSDAMIAAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDADV 122

Query: 58  DDILAYLRTFQQ 69
            +++AYL+TF +
Sbjct: 123 ANVIAYLKTFSK 134