BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0031.p (360 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1057 [KE] COG1167 Transcriptional regulators containing a DNA... 343 3e-94 RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA... 260 4e-69 BMEI0169 [KE] COG1167 Transcriptional regulators containing a DN... 259 5e-69 AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-... 255 9e-68 PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-... 254 3e-67 >RSp1057 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 471 Score = 343 bits (880), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 173/360 (48%), Positives = 228/360 (63%), Gaps = 4/360 (1%) Query: 1 MFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQF 60 +FAD + IK GCGWLP WL++ G+ +A R + R + GYGHP+GYAPL + + Q Sbjct: 110 VFADRSIAIKPGCGWLPNDWLDERGVQEAMRMVSRVSALRVAGYGHPWGYAPLGEYVAQS 169 Query: 61 LGHWALELGIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIG 120 L L + QVL T GATQALDLI+RT+ + GD V ++DP YCN++ +L+LAGL V+G Sbjct: 170 LALRGLPVERAQVLLTSGATQALDLIVRTLFKAGDVVAVEDPVYCNVLQVLKLAGLRVVG 229 Query: 121 VPRTPGGVDTDMLETLAR---LHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFW 177 VPRTP G+DT LET+ R P+ F ++VLQNPTG+S T A RVLQ AE++G W Sbjct: 230 VPRTPEGLDTAALETVLRQDEASRPRALFVSTVLQNPTGSSMTAQNAYRVLQLAEQHGLW 289 Query: 178 VVEDDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTK 237 +VEDD+ REL PMLAALDGL+R +YV +SKTI+PSLR GY+ + R++ TK Sbjct: 290 IVEDDLHRELADPAAPMLAALDGLRRTLYVSGFSKTISPSLRAGYVVADAAITRELARTK 349 Query: 238 MVLTLTNSEINERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGG 297 M + LT+SEI ER+VH +T + HV LNA L A + + A + E G F G Sbjct: 350 MAVALTSSEITERIVHAFVTRPAYAEHVARLNARLGAAHAGVEATMREHGAVVFDTPGRG 409 Query: 298 MFSWATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 357 +F WA + G A +ADRA + IWLAPG +F RFNV Y+ P L+DFL Sbjct: 410 LFLWARLPG-HADASALADRAIRGNIWLAPGQYFRPDDAASPWLRFNVAYSGDPALWDFL 468 >RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 490 Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 149/353 (42%), Positives = 205/353 (58%), Gaps = 6/353 (1%) Query: 8 PIKA-GCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWAL 66 P KA G G+LP WL+ E + A R + R G Q + +G P G+ PLRQ + L + Sbjct: 134 PRKAPGIGFLPNGWLDGELIANALRALGRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEI 193 Query: 67 ELGIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPG 126 +Q++ T G TQ+LDLI R QPGDTV++ DP + + G VIGVP T Sbjct: 194 GARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAAQGAQVIGVPYTTE 253 Query: 127 GVDTDMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFRE 186 G D LE L ++ PK+ SVL NPTGTS + A A ++L+ AE+YGF +VEDDI+ + Sbjct: 254 GPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGD 313 Query: 187 LGQATDPM--LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTN 244 L P LA+LD L+RVIY+GS+SKT+A +LRVG+IAC ELA+ + K++ L Sbjct: 314 LAPPGHPATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLAT 373 Query: 245 SEINERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATI 304 EINER+++ VLTEG +R+HV+ + A L A+ + L +GL F GMF WA Sbjct: 374 PEINERVLYKVLTEGQYRKHVERVRARLDRARDGVQRSLERLGLKLFAQQGAGMFIWADT 433 Query: 305 EGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 357 G + +A IA ++G APG F S T RFN+ + PE+ FL Sbjct: 434 -GRDTNA--IARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEMLRFL 483 >BMEI0169 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Bme Brucella melitensis Length = 484 Score = 259 bits (663), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/354 (38%), Positives = 205/354 (57%), Gaps = 1/354 (0%) Query: 5 ERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHW 64 E +K GCGWLP WL E L +A R I R + YG P G+ PLRQ + LG Sbjct: 124 ESRTLKPGCGWLPDGWLPQEALRRALRTIARDDQSNLTTYGEPLGFRPLRQHLAHRLGEQ 183 Query: 65 ALELGIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRT 124 +++ ++L T TQA+DLI R + QPGDTV++DDP Y N A+L + ++GVP T Sbjct: 184 GIDIAGGEILLTDSGTQAIDLICRYLLQPGDTVLVDDPCYFNFQAVLLTHRVKLVGVPYT 243 Query: 125 PGGVDTDMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIF 184 G D D A H PK++ + + L NPTG TPA A R+L+ AE +G +VED+IF Sbjct: 244 HSGPDLDAFANAATEHAPKLYISNAGLHNPTGGIMTPATAHRLLKLAEAHGITLVEDNIF 303 Query: 185 RELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTN 244 + + P+LA LDG +RV+++GS+SKT++ + RVGYIA +R+ + K+ + Sbjct: 304 GDFHPSPTPLLAELDGFERVLHIGSFSKTLSAAARVGYIAGRRDWIEGLTDLKLATSFGC 363 Query: 245 SEINERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATI 304 + ++ ++VH +L +G +RRH+++L L +A + +L GL +T +GGMF WA + Sbjct: 364 NALSPQIVHALLIDGTYRRHIESLRTRLADAMTLTANRLKATGLDLWTKPQGGMFLWARL 423 Query: 305 EGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFLR 358 + + +A A +KG+ LAPG+ F S RFNV + P ++ LR Sbjct: 424 PDG-MDSGPVARHALEKGVVLAPGNVFSPSCTAAGFLRFNVAQSADPYIYAVLR 476 >AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 449 Score = 255 bits (652), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 193/349 (55%), Gaps = 3/349 (0%) Query: 10 KAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWALELG 69 K GCGWLP W+ E L +A R + R+ A YG P G PLRQL+++ L ++ G Sbjct: 98 KPGCGWLPASWMPQEALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEHGVQAG 157 Query: 70 IEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVD 129 Q++ T TQA+DL+ R + QPGDTV++DDP Y N A+LR + ++GVP TP G D Sbjct: 158 ASQIMLTDSGTQAIDLLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPD 217 Query: 130 TDMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFRELGQ 189 + E + H P+++ T S + NPTG + A R+L AE+ G ++EDDIF + Sbjct: 218 LPLFEQALKEHQPRLYITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFET 277 Query: 190 ATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINE 249 P LAA DGL RV+ +GS+SKT++ S+R G+IA R + K+ + + Sbjct: 278 QAAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAAPRAWVEALTDLKIATAFGGTHFSA 337 Query: 250 RLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATI-EGCE 308 LV ++LT+G +R+HV+ L L A +L +G P+ + GMF W + EG + Sbjct: 338 ALVLSLLTDGSYRKHVEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLPEGTD 397 Query: 309 LSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 357 A ++A RA + + LAPG+ F S RFNV P++ L Sbjct: 398 --AADVAQRALARQVVLAPGNVFSSSQNASGFMRFNVSQMVGPQVMTVL 444 >PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 458 Score = 254 bits (648), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 195/359 (54%), Gaps = 2/359 (0%) Query: 2 FADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFL 61 F+ +K GCGW+P W E L A R++ RS A Y P G LRQ I + L Sbjct: 101 FSGSSTKLKLGCGWIPDSWREVEELSYAIRQVARSELAGLFDYSTPLGLPALRQHIQKRL 160 Query: 62 GHWALELGIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGV 121 + + EQ+LTT GA+ ALDL++RT+ +PGD V++++PGY NL +L+ G+ ++GV Sbjct: 161 RLIDIHVDPEQILTTTGASHALDLLVRTLLKPGDVVVVENPGYYNLFNLLKFHGVKMLGV 220 Query: 122 PRTPGGVDTDMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVED 181 PRT G DT LET+ R H PK FT S+ NPTGTS +P+ A RVLQ AE++ F +VED Sbjct: 221 PRTRHGPDTAALETILRAHKPKFLFTNSMYHNPTGTSLSPSVAHRVLQLAEQHDFHIVED 280 Query: 182 DIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLT 241 DI+ + LA LD L+RVIY+ S+SKT++ SLRVGY+ EL R++ KM + Sbjct: 281 DIYADFQNGPSTRLATLDSLRRVIYLASFSKTLSCSLRVGYLIAGPELIRRLADVKMYTS 340 Query: 242 LTNSEINERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSW 301 + + E +V +L G +R+ VQ L L + L + G F GGMF W Sbjct: 341 IGSQRFAECVVSTMLANGSYRKLVQRLRQRLTRQMAATLRVLGDNGWEVFAEPVGGMFVW 400 Query: 302 ATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFLRGL 360 A I + E+ A + + L+PG F R N+ YA P F Sbjct: 401 ARIGDYPFA--ELQAVATRLDVLLSPGSGFSPEGEESDWLRINIAYASDPRALAFFEAF 457