BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0013.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0061 [M] COG2891 Cell shape-determining protein Rso Ralstonia...   188   6e-48
PA4479 [M] COG2891 Cell shape-determining protein Pae Pseudomona...    77   2e-14
XF1311 [M] COG2891 Cell shape-determining protein Xfa Xylella fa...    65   8e-11
YPO3667 [M] COG2891 Cell shape-determining protein Ype Yersinia ...    63   3e-10
PM1957 [M] COG2891 Cell shape-determining protein Pmu Pasteurell...    59   4e-09

>RSc0061 [M] COG2891 Cell shape-determining protein Rso Ralstonia
           solanacearum
          Length = 170

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 133/170 (78%), Gaps = 1/170 (0%)

Query: 1   MNN-QYILLPASPLFIAFSLIVAFVLNLMPWGQMVGVPDFVALALVFWNIHQPRKVGISV 59
           MN+ QY+L P +P FIAFS +VAF+ NLMPWG +  +PD VAL LVFWNIHQPR+VG+ V
Sbjct: 1   MNSPQYLLRPVNPGFIAFSFVVAFLFNLMPWGHLQWIPDLVALVLVFWNIHQPRRVGMVV 60

Query: 60  AFMMGLLMDVNEATLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLMLLAQAVQ 119
           AF++GLLMDV+EA LLGE+A+AYTLLSYFAI IHRRVLWF + +QALHVLPL+LLA AV 
Sbjct: 61  AFLLGLLMDVHEARLLGEHAMAYTLLSYFAITIHRRVLWFSVLSQALHVLPLLLLAHAVP 120

Query: 120 LVIQLLVTGKSPDWFYFSESLVSALLWPVVSVLLLAPQRRAVDRDENRPI 169
           ++I+LL+    PDW      L+ A LWPV + +LLAPQRR    DE RPI
Sbjct: 121 ILIRLLMGAHLPDWQVALPPLIEAALWPVANAILLAPQRRPESVDETRPI 170


>PA4479 [M] COG2891 Cell shape-determining protein Pae Pseudomonas
           aeruginosa
          Length = 164

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 2/141 (1%)

Query: 15  IAFSLIVAFVLNL--MPWGQMVGVPDFVALALVFWNIHQPRKVGISVAFMMGLLMDVNEA 72
           I  SL+V  VL +  MP    +G P ++A+ L +W +  P +VG+  A+++GL  DV   
Sbjct: 14  IWLSLLVGLVLAVAPMPTFTEIGRPLWLAMLLTYWVLLLPERVGMVTAWLLGLAQDVLYG 73

Query: 73  TLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLMLLAQAVQLVIQLLVTGKSPD 132
            LLG+NAL   L+++  + +H+R+  FP   Q L ++ +  LAQ +QL +  L   + P 
Sbjct: 74  NLLGQNALILGLITFLVLSLHQRLRMFPAWQQCLVLVVVYGLAQLLQLWLNALTGNRPPT 133

Query: 133 WFYFSESLVSALLWPVVSVLL 153
             +   +LVSALLWP V  LL
Sbjct: 134 LTFLLPALVSALLWPWVYALL 154


>XF1311 [M] COG2891 Cell shape-determining protein Xfa Xylella fastidiosa
           9a5c
          Length = 161

 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 63/119 (52%)

Query: 37  PDFVALALVFWNIHQPRKVGISVAFMMGLLMDVNEATLLGENALAYTLLSYFAIMIHRRV 96
           P ++AL L++W I  P +VGI  AF+MG+L D     LLGE AL   ++S+       R+
Sbjct: 34  PYWLALVLMYWVIETPGRVGIGFAFVMGVLADFLYGGLLGEQALRLVVMSFIVQRFRARL 93

Query: 97  LWFPLRTQALHVLPLMLLAQAVQLVIQLLVTGKSPDWFYFSESLVSALLWPVVSVLLLA 155
            +FP+  QAL +  L+     V   + L +      W Y+S  L+  LLW  + VLL A
Sbjct: 94  RFFPMPQQALVIGGLLFNDCVVATALHLTLGEPLLSWSYWSAPLLGMLLWAPLFVLLDA 152


>YPO3667 [M] COG2891 Cell shape-determining protein Ype Yersinia pestis
          Length = 162

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 15  IAFSLIVAFVLNLMPWGQMVGV--PDFVALALVFWNIHQPRKVGISVAFMMGLLMDVNEA 72
           I  S ++A VL +MPW + + +  P ++AL L++W +  P +V +   F++GL+MD+   
Sbjct: 12  IWLSFLIAMVLQIMPWPEQIYMFRPSWLALVLIYWVMALPHRVNVGTGFILGLIMDLILG 71

Query: 73  TLLGENALAYTLLSY---FAIMIHRRVLWFPLRTQALHVLPLMLLAQAVQLVIQLLVTGK 129
           + LG  ALA+++++Y   F   + R +    L  QAL V+ L L    V    + LV   
Sbjct: 72  STLGVRALAFSIIAYLVAFKFQLFRNM---ALWQQALIVMLLSLTMDVVVFWSEFLVINV 128

Query: 130 S--PDWFYFSESLVSALLWPVVSVLLLAPQRR 159
           +  P+   F  S+V+ +LWP + +L+   +R+
Sbjct: 129 AFRPE--VFWSSVVNGILWPWLFLLMRKIRRQ 158


>PM1957 [M] COG2891 Cell shape-determining protein Pmu Pasteurella
           multocida
          Length = 162

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 1   MNNQYILLPASPLFIAFSLIVAFVLNLMPWGQMVG--VPDFVALALVFWNIHQPRKVGIS 58
           M  ++IL     L +  + IVA V+ + PW        P ++ L L++W +  P KV I 
Sbjct: 1   MQKRFIL---QWLILICTFIVALVMEIAPWPTDFQNFKPAWLVLVLLYWTLALPNKVSIG 57

Query: 59  VAFMMGLLMDVNEATLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLMLLAQAV 118
            AF++G++ D+   ++LG +AL  +L +Y   + H  +    L  Q+L V+  +   +  
Sbjct: 58  SAFVLGVIWDLVLGSILGVHALVLSLFTYLVALNHLVLRNLSLWMQSLLVIIFVFSIRFS 117

Query: 119 QLVIQLLVTGKSPDWFYFSESLVSALLWPVVSVLLLAPQRR 159
             +I+LL+   S +W     +L S LLWP V +LL   +R+
Sbjct: 118 IFLIELLLHSASFNWQESYGALASGLLWPWVFLLLRKIRRQ 158