BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0006.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4423 [R] COG3107 Putative lipoprotein Pae Pseudomonas aeruginosa     62   9e-10

>PA4423 [R] COG3107 Putative lipoprotein Pae Pseudomonas aeruginosa
          Length = 604

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 26/156 (16%)

Query: 32  LIFVALDAAQTVQLRSAVG----NDLPLYGTSQINPYTLKRDNPNDKLPELDGVRLIDIP 87
            +F+A    Q  Q++  +      DLP+Y TS +  YT   +   D+  +L+G+R  + P
Sbjct: 460 FVFLAATPQQARQIKPTLAFQYAGDLPVYATSHL--YTGTNNPTQDQ--DLNGIRFCETP 515

Query: 88  WQLQPDN----VAVARYPRPAVNDNERPNPDLARLYALGIDAYRVAYGIAQKQS--GFDI 141
           W L P +       A++P+         N  + RLYA+G+DAYR+A  + + ++     I
Sbjct: 516 WLLNPSDPTRQQVAAQWPQA--------NGSMGRLYAMGVDAYRLAPRLPELKAVPSLQI 567

Query: 142 DGVTGRLNVNMVSGGTTFFQRQETQAVYQDGWPVPM 177
           DG+TG L++N     T   +RQ   A +++G   P+
Sbjct: 568 DGLTGTLSLN----PTQRIERQLQWAEFRNGQVQPL 599