BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0167.p         (116 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1880 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   103   1e-22
SMb20285 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    80   8e-16
AGpA611 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    75   4e-14

>RSc1880 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 324

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 8/115 (6%)

Query: 1   MSNRYRLRQRVELALGEDSQLDVA-IDTNTSFNAIMAARAGLGVALVEPATAYGMPIEGM 59
           M N YRLR+R++ AL +        I+TN SFNA+   RAGLGVAL+EP TAYG+PIEG+
Sbjct: 192 MHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEPVTAYGVPIEGV 251

Query: 60  VVKRLAVEIPFYFGVVTPYG-KPVEGVTQRLIDAVEKAARSTLQGFVKRDASLHD 113
            V+ + V IPF+FGV+TP   +P   VT  LIDA+ +AA+  L      D  LHD
Sbjct: 252 TVRPIDVSIPFFFGVITPEARRPSPAVTA-LIDALSRAAQRLLP-----DCKLHD 300


>SMb20285 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 325

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 3/110 (2%)

Query: 1   MSNRYRLRQRVELALGEDSQLDVA--IDTNTSFNAIMAARAGLGVALVEPATAYGMPIEG 58
           M+N +RLR+RV++AL E + +  A  I T+ S NA+  A  GLGVA+VEPATAYG+ +  
Sbjct: 197 MANPFRLRRRVDIAL-EAANIRPARIIATSVSVNAVQIASTGLGVAIVEPATAYGLKLAN 255

Query: 59  MVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQGFVKRD 108
           + V+ L V+IPF + + +   +P+   ++ LI  + + A + + GF   D
Sbjct: 256 VAVRALDVDIPFPWAIFSAAARPLSDSSRELIQEIIQIASACIPGFTAHD 305


>AGpA611 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 326

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 1   MSNRYRLRQRVELALGE-DSQLDVAIDTNTSFNAIMAARAGLGVALVEPATAYGMPIEGM 59
           ++N +RLR+RV+ AL E + +    I T+ + +A+  A  G+G+A+VEPATAYG    G+
Sbjct: 197 LANPFRLRRRVDKALQEANVRARRIIATSAAMSAVQVASTGMGIAIVEPATAYGPLTAGV 256

Query: 60  VVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQGFVKRD 108
            V+ L V+IPF +G+ +   +P+    Q LI  + + A + +  F   D
Sbjct: 257 TVRPLDVDIPFLWGIFSATARPLSATAQELIQLIIRVASARMPDFTAHD 305