BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0141.p         (188 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr3599 [T] COG3706 Response regulator containing a CheY-like re...   151   9e-37
PA3702 [T] COG3706 Response regulator containing a CheY-like rec...   151   9e-37
VC2370_2 [T] COG2199 FOG Vch Vibrio cholerae                          148   7e-36
sll0821_7 [T] COG2199 FOG Syn Synechocystis                           143   3e-34
sll0779_2 [T] COG2199 FOG Syn Synechocystis                           142   3e-34

>alr3599 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Nos Nostoc sp. PCC 7120
          Length = 344

 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 5   LQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMIDVDHFKQYNDHYGHVVGD 64
           LQ  +  DGLTG  NRR FD  L  +     + G   SL++ D+D+FK YND YGH  GD
Sbjct: 171 LQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKFYNDQYGHPTGD 230

Query: 65  VCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIVVAERIGAAVRAMGIPHA 124
           +CL+ + A +S  AQ+  D VARYGGEEF+V++P   + GAI VA  I  +VR + I H 
Sbjct: 231 ICLQKVGAVLSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQTSVRDLQIAHD 290

Query: 125 TSE-KGWVTVSIGITSITSAEGFSYQPRELVESADKALYQAKDTGRDR 171
            S     +T+S+G+ +IT    +   P +L+ +ADKALY+AK++GR+R
Sbjct: 291 KSAVSQHITLSMGVATITPT--WESSPSDLIAAADKALYKAKESGRNR 336


>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 347

 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 106/174 (60%), Gaps = 2/174 (1%)

Query: 4   LLQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMIDVDHFKQYNDHYGHVVG 63
           +LQ+    DGLTG  NRRHFDE LE E  R  R     SLLMIDVD+FK YND +GHV G
Sbjct: 166 VLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAG 225

Query: 64  DVCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIVVAERIGAAVRAMGIPH 123
           D  LR +A AI     R  D  ARYGGEEF+++LP     GA ++AE++   V ++ I H
Sbjct: 226 DEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISH 285

Query: 124 ATSEKG-WVTVSIGITSITSAEGFSYQPRELVESADKALYQAKDTGRDRAVFRE 176
                G  +TVSIG++++    G     R L+E AD+ALYQAK+ GR++    E
Sbjct: 286 DQPRPGSHLTVSIGVSTLVPGGG-GQTFRVLIEMADQALYQAKNNGRNQVGLME 338


>VC2370_2 [T] COG2199 FOG Vch Vibrio cholerae
          Length = 188

 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 5   LQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMIDVDHFKQYNDHYGHVVGD 64
           L++ S  D LT   NRR FDE L        R G   S+++ DVD+FK YND YGH++GD
Sbjct: 15  LERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGD 74

Query: 65  VCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIVVAERIGAAVRAMGIPHA 124
             L+ IA A +  A R  D VARYGGEEF +LLP    +GAI+VAERI   VR + IPH 
Sbjct: 75  ETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHD 134

Query: 125 TSE-KGWVTVSIGI-TSITSAEGFSYQPRELVESADKALYQAKDTGRDRA 172
            S+    +TVS+GI T I   E     P ++VE AD+ALYQAK  GR++ 
Sbjct: 135 HSKVADRITVSLGIVTLIPRPEDV---PEQMVELADRALYQAKANGRNQT 181


>sll0821_7 [T] COG2199 FOG Syn Synechocystis
          Length = 182

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 100/167 (59%), Gaps = 2/167 (1%)

Query: 5   LQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMIDVDHFKQYNDHYGHVVGD 64
           LQ+ S  D LT   NR  FD  LE E  R  R+    +LL+ DVD FK +ND+YGH  GD
Sbjct: 2   LQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGD 61

Query: 65  VCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIVVAERIGAAVRAMGIPHA 124
            CL+ IA A++  A+R  D VARYGGEEF+++L E    GAI V E +   V  + IPH 
Sbjct: 62  RCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANLAIPHT 121

Query: 125 TSEKGWVTVSIGITSITSAEGFSYQPRELVESADKALYQAKDTGRDR 171
            S  G VT+SIGI   T     +  P  LV++AD ALY+AK  GR++
Sbjct: 122 VSGTGHVTLSIGIAVYTPERHIN--PNALVKAADLALYEAKAKGRNQ 166


>sll0779_2 [T] COG2199 FOG Syn Synechocystis
          Length = 184

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 5   LQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMIDVDHFKQYNDHYGHVVGD 64
           L++ ++ DGLTG  NRR FD+ LE E     R   + +L+M+D+D+FK YND  GH  GD
Sbjct: 2   LERLTQIDGLTGVYNRRFFDQALEREWQIAFRETESLTLVMLDIDYFKLYNDTLGHQAGD 61

Query: 65  VCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIVVAERIGAAVRAMGIPHA 124
            CLR +AA +  +  R  D VARYGGEEF+++LP    +GA++VA+RI   + A  I H 
Sbjct: 62  HCLRIVAAILQESVHRTSDLVARYGGEEFALILPRTDLSGAVIVAQRIKTLMDAKAISHP 121

Query: 125 TSE-KGWVTVSIGITSITSAEGFSYQPRELVESADKALYQAKDTGRD 170
           TSE   +VTVSIGI       G S      V+ AD ALYQAK  GR+
Sbjct: 122 TSEIANYVTVSIGIHCAVPRPGLSLA--SWVKCADDALYQAKKRGRN 166