BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0107.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20219 [TK] COG0745 Response regulators consisting of a CheY-l...   192   2e-49
PA4101 [TK] COG0745 Response regulators consisting of a CheY-lik...   189   1e-48
mlr2740 [TK] COG0745 Response regulators consisting of a CheY-li...   144   6e-35
PA3192 [TK] COG0745 Response regulators consisting of a CheY-lik...   135   4e-32
BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-...   127   1e-29

>SMb20219 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sme
           Sinorhizobium meliloti
          Length = 245

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 113/142 (79%), Gaps = 1/142 (0%)

Query: 1   MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATM-RFAGWTLDLTARHLVNK 59
           MGADDY+AKPF  REL ARI++VLRR + LP N+   +   + RF  W LD TARHL++ 
Sbjct: 98  MGADDYIAKPFSARELLARIKAVLRRARMLPANLQVSEAGQLLRFGQWKLDTTARHLIDA 157

Query: 60  DGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGD 119
           DG  +ALSGAE+RLL+VF+DHP RVLNRDQLL LTQGRE++ FDRS+D+ +SR+RQ+LGD
Sbjct: 158 DGTAIALSGAEYRLLRVFVDHPQRVLNRDQLLNLTQGREAELFDRSIDLLVSRVRQRLGD 217

Query: 120 DARTPTIIKTVRNEGYVLATTV 141
           DAR PT I+TVR+EGYV +  V
Sbjct: 218 DAREPTYIRTVRSEGYVFSVPV 239


>PA4101 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 246

 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 112/142 (78%), Gaps = 1/142 (0%)

Query: 1   MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATM-RFAGWTLDLTARHLVNK 59
           MGADDYL KPF  REL ARI +VLRRT+ LPPN+   + + +  F  W LD +ARHL++ 
Sbjct: 98  MGADDYLTKPFSARELLARINAVLRRTRMLPPNLTVSESSRLIGFGQWQLDTSARHLLDD 157

Query: 60  DGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGD 119
            G VVALSGAE+RLL+VFLDHP RVL+RDQLL LTQGRE+D FDRS+D+ +SRLRQ+LGD
Sbjct: 158 AGTVVALSGAEYRLLRVFLDHPQRVLSRDQLLNLTQGREADIFDRSIDLLVSRLRQRLGD 217

Query: 120 DARTPTIIKTVRNEGYVLATTV 141
           DAR P  IKTVR+EGYV +  V
Sbjct: 218 DAREPEYIKTVRSEGYVFSLPV 239


>mlr2740 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Mlo
           Mesorhizobium loti
          Length = 238

 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 94/144 (65%), Gaps = 1/144 (0%)

Query: 1   MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKD 60
           MGADDY+ KPF+PREL ARIR+VLRR  A  P  A       RFAGWT+D + R L   D
Sbjct: 96  MGADDYVPKPFDPRELLARIRAVLRRNGAAEPKRATAK-QIYRFAGWTMDCSRRRLTAPD 154

Query: 61  GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 120
            V V L+ AEF LL+ F+    RVL RDQL+EL+ G     FDRS+DI +SRLR+K+ DD
Sbjct: 155 DVRVELTMAEFNLLQTFVKSAQRVLTRDQLIELSGGDSDYSFDRSIDILVSRLRRKMEDD 214

Query: 121 ARTPTIIKTVRNEGYVLATTVTAE 144
            +TP +I TVR+ GY      T+E
Sbjct: 215 PKTPKLILTVRSGGYQFLPETTSE 238


>PA3192 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 242

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 4/141 (2%)

Query: 1   MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKD 60
           +GADDYL KPF PREL ARI+++LRR Q     +   DV  + F  W LD  +  L ++D
Sbjct: 100 LGADDYLGKPFSPRELLARIKALLRRAQF--TQVRGGDV--LAFEDWRLDTVSHRLFHED 155

Query: 61  GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 120
           G    LSGA+F LLK+FLDHP ++L+RD +   T+GRE  P +R VD+ +SRLRQ+L D 
Sbjct: 156 GEEFFLSGADFALLKLFLDHPQQILDRDTIANATRGREVLPLERIVDMAVSRLRQRLRDT 215

Query: 121 ARTPTIIKTVRNEGYVLATTV 141
            + P +I+TVR  GY+LA  V
Sbjct: 216 GKAPRLIQTVRGSGYLLAAQV 236


>BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Bme
           Brucella melitensis
          Length = 238

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 89/142 (62%), Gaps = 3/142 (2%)

Query: 1   MGADDYLAKPFEPRELFARIRSVLRRTQA-LPPNMAQPDVATMRFAGWTLDLTARHLVNK 59
           +GADDY+AKPF+PREL ARIR+VLRR +    P  A   +   RFAGWTLD   R L + 
Sbjct: 96  IGADDYIAKPFDPRELLARIRAVLRRFEGNRSPQRALTQI--YRFAGWTLDCARRRLTSP 153

Query: 60  DGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGD 119
             V V L+ AEF LL+ F+     +L+RDQL+E+   +    +DRSVDI ISRLR+KL D
Sbjct: 154 HDVRVELTTAEFNLLEAFVKSSQHILSRDQLMEMAGHQAVYGYDRSVDILISRLRKKLED 213

Query: 120 DARTPTIIKTVRNEGYVLATTV 141
           D   P +I T+R  GY     V
Sbjct: 214 DPCAPKLILTIRGGGYQFGHEV 235