BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0079.p (345 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2259 [K] COG1609 Transcriptional regulators Pae Pseudomonas ae... 226 7e-59 BS_kdgR [K] COG1609 Transcriptional regulators Bsu Bacillus subt... 179 9e-45 CAC0393 [K] COG1609 Transcriptional regulators Cac Clostridium a... 138 1e-32 RSc1014 [K] COG1609 Transcriptional regulators Rso Ralstonia sol... 119 1e-26 TM1200 [K] COG1609 Transcriptional regulators Tma Thermotoga mar... 118 2e-26 >PA2259 [K] COG1609 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 340 Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 118/218 (54%), Positives = 150/218 (68%), Gaps = 1/218 (0%) Query: 11 RVTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRT 70 RVTI QVA AGVSK SVSRY+GG+ L+ +I + I +L Y+P+QMARGLK GRT Sbjct: 11 RVTINQVAEAAGVSKASVSRYIGGDRQLLADATARRIERAIDQLDYRPNQMARGLKRGRT 70 Query: 71 RLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGL 130 RLIGMLVADILNPYSVAV+HG E AC++HGY+L++CNT D+ +E+ LAAL SY+VEGL Sbjct: 71 RLIGMLVADILNPYSVAVMHGVETACREHGYSLVVCNTDRDDEQERHHLAALQSYNVEGL 130 Query: 131 LFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDI 190 + NT G + LR L P+VL+DR + D DLVGLDN A + A HL +G+ DI Sbjct: 131 IVNTLGHHPGELRAL-HRELPMVLVDRQLAELDTDLVGLDNADAVEQALDHLQHRGFRDI 189 Query: 191 ALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEVD 228 LV +PL G SSR R F ++ +RP G+ L+ D Sbjct: 190 LLVTEPLDGTSSRIERVQAFNASIGRRPALKGQVLQTD 227 >BS_kdgR [K] COG1609 Transcriptional regulators Bsu Bacillus subtilis Length = 339 Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 6 KTGTDRVTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGL 65 K T TI VA AGVSK++VSRY+ G+ DA+S I K IA L Y+PS+MA+GL Sbjct: 3 KKTTGHTTIKDVAECAGVSKSTVSRYINGKIDAISPEKVKNIKKAIAELNYRPSKMAQGL 62 Query: 66 KGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSY 125 K +++LIG +VADI NP+SVA G E C ++GY++M+CNT N +E++ L L ++ Sbjct: 63 KIKKSKLIGFVVADITNPFSVAAFRGVEEVCDQYGYSIMVCNTDNSPEKEREMLLKLEAH 122 Query: 126 SVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQ 185 SVEGL+ N G N LR + P +L+DR + D V DN + + ++ Sbjct: 123 SVEGLILNATGENKDVLRAFAEQQIPTILIDRKLPDLKLDTVTTDNRWITKEILQKVYSK 182 Query: 186 GYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHG--ETLEVDV 229 GYTD+AL +P+ +S R R A + Q MA + +G E+DV Sbjct: 183 GYTDVALFTEPISSISPRAERAAVY-QEMASVQNVNGLVRLHEIDV 227 >CAC0393 [K] COG1609 Transcriptional regulators Cac Clostridium acetobutylicum Length = 344 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 117/207 (56%) Query: 11 RVTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRT 70 +V I VA+ AGVSK ++SRYL G+F+ +S +D+I ++I L Y+P+ +AR LK ++ Sbjct: 6 KVVIDDVAKLAGVSKATISRYLNGKFEYMSEKTKDRIKESIEELNYRPNNIARSLKSNKS 65 Query: 71 RLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGL 130 +LIG+++AD+ NP+S ++ G C+ GY +++ N+ ND +E++ + +L VEG+ Sbjct: 66 KLIGVVIADLTNPFSSIIIKGIGDECKARGYNMVIANSDNDVKQEEEYIKSLLDQRVEGI 125 Query: 131 LFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDI 190 + N+ G N L + + PV ++DR D V +N ++L+ G+ + Sbjct: 126 IVNSTGYNEEFLLSIKERGIPVSMVDRTFCEDKVDSVKSNNYDITVETINYLIDAGFNSL 185 Query: 191 ALVVQPLFGVSSRQGRQAGFLQAMAQR 217 + L + R R+ F+ ++R Sbjct: 186 CFFTERLDNIKPRIERERAFIDVCSKR 212 >RSc1014 [K] COG1609 Transcriptional regulators Rso Ralstonia solanacearum Length = 347 Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 11/241 (4%) Query: 13 TIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRTRL 72 TI VA AGVS T+VS + +++ R ++ + I Y PS +AR LK TR Sbjct: 3 TIKDVAALAGVSFTTVSHVINNT-RPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRT 61 Query: 73 IGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGLLF 132 IG+LV NPY + G E C GY+++LCN+ +D +++ L L V+GL+ Sbjct: 62 IGVLVPTATNPYFAELARGIEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIV 121 Query: 133 NTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDIAL 192 ++ G + L LG++A PVV++DR EG D V +D+ + A LAT HLL G+ IA Sbjct: 122 SSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDHEEGAYLATRHLLELGHRRIAC 181 Query: 193 VVQPLFGVSSRQGRQAGFLQAM--AQRPDCHGETLEVDVDQPARGRPPAAR-----GEWP 245 + P +S GR AGF +A+ A P+ E D P R AAR GE P Sbjct: 182 ISGP-STLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYR--AARELLTTGETP 238 Query: 246 C 246 Sbjct: 239 T 239 >TM1200 [K] COG1609 Transcriptional regulators Tma Thermotoga maritima Length = 333 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 12 VTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRTR 71 VTI +A +AGVS +VSR L + D +S R +I K LGY + A L+ +T Sbjct: 6 VTIRDIAEKAGVSINTVSRALNNKPD-ISEETRRKILKIAQELGYVKNATASSLRSKQTN 64 Query: 72 LIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGLL 131 ++G+++AD NP+ VL G EAA +K+GY +ML NT E++++ L V+GLL Sbjct: 65 IVGVIIADSANPFYAEVLKGIEAASRKYGYQIMLMNTERIYENEEKAIEVLLQRRVDGLL 124 Query: 132 FNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDIA 191 ++ L + P V++ RH E + D + D VK LAT HL+ +G +I Sbjct: 125 ITPVQDRSDDIKTLIERKVPFVIVGRHFEELEVDEIHSDEVKGGYLATRHLIERGRKNII 184 Query: 192 LVVQPLFGVSSRQGRQAGFLQAMAQR--PDCHGETLEVDVD 230 ++ LF S+ R G+ +A+ + P +E D+D Sbjct: 185 MISGYLFK-SAAYMRLEGYRKALKEYGIPFSEKMIIETDID 224