BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0035.p (302 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 216 7e-56 ZybhD [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 215 9e-56 ECs0796 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 215 9e-56 AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 211 2e-54 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 201 1e-51 >ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 338 Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 170/280 (60%) Query: 6 ETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSLTPAG 65 E + ++AF+ +A SSF AA+ L IT PAL+RRI+ +E+ L +LF+RTTR+V+LT AG Sbjct: 25 ELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAG 84 Query: 66 ELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTHPNVR 125 + L A+ ++ + + + ++ A+ R VT+AC+P+ LPL + + +PN++ Sbjct: 85 KRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIK 144 Query: 126 VRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAAQSSL 185 VRI+++ +ESV E+DFG+N + IDF L E ++ HPLA + + Sbjct: 145 VRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLV 204 Query: 186 HWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGVALLP 245 W+ L G K++ V SSSGNR LI+ + P + YE H++ ++ LV AGLG++ LP Sbjct: 205 EWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALP 264 Query: 246 ELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAA 285 LA+ +APY I+ P+ PV+ R +G+I K VL PAA Sbjct: 265 GLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAA 304 >ZybhD [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 338 Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 170/280 (60%) Query: 6 ETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSLTPAG 65 E + ++AF+ +A SSF AA+ L IT PAL+RRI+ +E+ L +LF+RTTR+V+LT AG Sbjct: 25 ELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAG 84 Query: 66 ELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTHPNVR 125 + L A+ ++ + + + ++ A+ R VT+AC+P+ LPL + + +PN++ Sbjct: 85 KRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIK 144 Query: 126 VRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAAQSSL 185 VRI+++ +ESV E+DFG+N + IDF L E ++ HPLA + + Sbjct: 145 VRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLV 204 Query: 186 HWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGVALLP 245 W+ L G K++ V SSSGNR LI+ + P + YE H++ ++ LV AGLG++ LP Sbjct: 205 EWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALP 264 Query: 246 ELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAA 285 LA+ +APY I+ P+ PV+ R +G+I K VL PAA Sbjct: 265 GLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAA 304 >ECs0796 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 338 Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 170/280 (60%) Query: 6 ETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSLTPAG 65 E + ++AF+ +A SSF AA+ L IT PAL+RRI+ +E+ L +LF+RTTR+V+LT AG Sbjct: 25 ELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAG 84 Query: 66 ELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTHPNVR 125 + L A+ ++ + + + ++ A+ R VT+AC+P+ LPL + + +PN++ Sbjct: 85 KRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIK 144 Query: 126 VRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAAQSSL 185 VRI+++ +ESV E+DFG+N + IDF L E ++ HPLA + + Sbjct: 145 VRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLV 204 Query: 186 HWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGVALLP 245 W+ L G K++ V SSSGNR LI+ + P + YE H++ ++ LV AGLG++ LP Sbjct: 205 EWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALP 264 Query: 246 ELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAA 285 LA+ +APY I+ P+ PV+ R +G+I K VL PAA Sbjct: 265 GLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAA 304 >AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 177/292 (60%), Gaps = 1/292 (0%) Query: 1 MRINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVS 60 M IN E +L+AF AV SF AA+ L I+ PAL+RRI+ LEQA+ L +RTTR V+ Sbjct: 1 MSINCEILDLRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVA 60 Query: 61 LTPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYART 120 T G+ + + +++E + ++ +++ G A RR +T+ACVP+ A LP V+K +++ Sbjct: 61 PTAMGQEVMPLVRRMLEEFDGSLFAMKDG-AQRRGLITMACVPTAAFYFLPTVIKTFSKQ 119 Query: 121 HPNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLA 180 +P++R+RI D A E L++V +GE +FG+N +G + ++ F L + ++ M HPLA Sbjct: 120 YPHIRLRIRDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFVLAMRKDHPLA 179 Query: 181 AQSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 A ++ W L LV V SSGNR+L+D A +R + YE H+ ++ LV AGLG Sbjct: 180 AFETIQWDQLEPHPLVVVDRSSGNRTLLDGALARHNLKLNWFYEVTHLNTSLGLVEAGLG 239 Query: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQAL 292 +++LP LA + +V RP+ +PV+SR +G++ + L PAA Q L Sbjct: 240 ISVLPRLATPQDEHPFLVTRPIVNPVVSRTIGIVQRRSSALSPAAEKFVQML 291 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 175/299 (58%) Query: 1 MRINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVS 60 M IN E +L+AFL+V SF AAE L ++ PALSRRI+ LEQA+ + +RTTR VS Sbjct: 1 MSINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVS 60 Query: 61 LTPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYART 120 T G + + +++E + ++ +V +R VT+AC+P+ A LP V++ + Sbjct: 61 ATALGIELVPLVRRMLEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEE 120 Query: 121 HPNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLA 180 +PN+R RI+D A + L++V +GE +FG+N +G + ++ F L + ++ HPLA Sbjct: 121 YPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLA 180 Query: 181 AQSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 A+ S+ W L L++V SSGNR+L+D A ++ + YE H++ ++ LV AGLG Sbjct: 181 AKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLG 240 Query: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALREAMASK 299 +++LP +A + ++ RP+ P +SR +G++ +G L PAA + L AS Sbjct: 241 ISVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD 299