BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0032.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   168   5e-42
RSp1224_2 [NT] COG0840 Methyl-accepting chemotaxis protein Rso R...   159   2e-39
RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   158   7e-39
YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...   155   3e-38
VCA1092_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch V...   155   3e-38

>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 111/134 (82%)

Query: 1   VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60
           VEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIKALI  SV QV+ G  LV++AG+TME
Sbjct: 380 VEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATME 439

Query: 61  NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120
            +V ++QRVS+IV EIS A+ EQ +G+ QV QA+  MDE TQQNAALVEQ+AAAA SLQ 
Sbjct: 440 QIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQG 499

Query: 121 QSQRLRELVGVFRL 134
           Q+Q+L + V VF+L
Sbjct: 500 QAQQLVQAVAVFKL 513


>RSp1224_2 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 381

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 106/133 (79%)

Query: 1   VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60
           VEAARAGEQGRGFAVVA EVR+LAQRSA AAREIK LI  SV +V +G RLV +AG TM+
Sbjct: 249 VEAARAGEQGRGFAVVAGEVRALAQRSASAAREIKDLIGASVGKVASGSRLVGEAGKTMD 308

Query: 61  NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120
           ++V  V+RVS ++ EIS AT EQ  GI QV+QA+ H+D+ TQ+NA LVEQ+A AA+SL+ 
Sbjct: 309 DIVSQVKRVSGMIAEISLATAEQTDGIMQVSQAVTHLDQITQENATLVEQSALAAESLRV 368

Query: 121 QSQRLRELVGVFR 133
           Q+ RL E VGVFR
Sbjct: 369 QATRLVEAVGVFR 381


>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 106/134 (79%)

Query: 1   VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60
           VEAARAGEQGRGFAVVA EVRSLAQRSA AA+EIKALI+DSV  V  G   VE+AG  + 
Sbjct: 380 VEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIR 439

Query: 61  NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120
           +VV  +Q V++IV EIS +++EQ  GIEQ+N+AI  MD+ TQ+NA+LVE++A AAQ+LQ 
Sbjct: 440 DVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQD 499

Query: 121 QSQRLRELVGVFRL 134
           Q+ +L ++V  F+L
Sbjct: 500 QANQLADMVSTFKL 513


>YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 557

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 106/136 (77%)

Query: 1   VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60
           VEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIK LIDDSV +VD G  LVE AG TM 
Sbjct: 384 VEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMG 443

Query: 61  NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120
           ++V +V RV+ I+GEI+ A+ EQ  GI+Q+ QA+  MD  TQQNA+LVE++A+AA SL++
Sbjct: 444 DIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEE 503

Query: 121 QSQRLRELVGVFRLPL 136
           Q+  L + + VF L +
Sbjct: 504 QASMLTQAMSVFVLSV 519


>VCA1092_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 412

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 107/132 (81%)

Query: 1   VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60
           VEAARAGEQGRGFAVVA EVR+LAQRSAGAA+EIK LI+DSV +V+ G RLV ++GST++
Sbjct: 228 VEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVNEGSRLVNESGSTLK 287

Query: 61  NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120
            +V +V RVS ++ +I+ ++ EQ TGI+++N+AI  MDE TQQNA+LVE+ +AA+QSL+ 
Sbjct: 288 EIVEAVVRVSDLIAQIAASSVEQSTGIDEINRAIAAMDEMTQQNASLVEETSAASQSLKD 347

Query: 121 QSQRLRELVGVF 132
           + + L  L+  F
Sbjct: 348 EGKELLNLMNFF 359