BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0031.p (387 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 225 2e-58 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 183 7e-46 RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 163 6e-40 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 158 2e-38 RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 158 2e-38 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 210/363 (57%) Query: 2 LAHLKLGTRLSLGFGLVLALLTGITVLAIVSLFTLHEDTRRIVEDRYPQVLLANDVLLRI 61 ++ +++G RL F LV+ALL GI + I L + +IV +RY + L+N + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 62 SENASAMRNLLLLDDHQKLTEEIARIAKGEAAITATLDQLQARLSSEQGRKSFAEILALR 121 + + NLLL+ ++ T+ ++ A A +L+ L+++QG+ F E R Sbjct: 63 YKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFDAR 122 Query: 122 SKYHEGQQRFLQLASTGATMDATEFLLTTLRQDQENTIVRLKGYIAVGTRMMERSGEEAA 181 S Y ++F L +A + + Q+ V + + ME EAA Sbjct: 123 SAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAA 182 Query: 182 AQYHQKTRIMLAIALLAVASGGACAWWITRSITRPVRHAVGVAQQVAHGNLDSRIEQGGR 241 AQ M+ +A+LA A +ITR+ITRP+ HA+ +A+ VA GNL +E + Sbjct: 183 AQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVDTQ 242 Query: 242 DELGQLLEALHQMNGSLTGIVGEVRKGAETIATASSEIAGGNLDLSSRTEQQAGSLEQTA 301 DE+G+LL AL M +L GIV +VR G +TI ASSE+A GN+DLSSRTEQQA SLE+TA Sbjct: 243 DEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETA 302 Query: 302 AAMEELTSTVRQTADNAKAANQLAAEAATVAARSGAVVQEVVATMAGISQASCRIVDIIG 361 AAME+LTSTV+Q ADNA+ A++LA+ A+ VA + G V E + TM+ I+ +S +IVDIIG Sbjct: 303 AAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIG 362 Query: 362 VID 364 VID Sbjct: 363 VID 365 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 204/363 (56%), Gaps = 14/363 (3%) Query: 1 MLAHLKLGTRLSLGFGLVLALLTGITVLAIVSLFTLHEDTRRIVEDRYPQVLLANDVLLR 60 L ++K+ ++L + FGL + L+ + L++ SL + + I+ + YP + AN ++ Sbjct: 2 FLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDN 61 Query: 61 ISENASAMRNLLLLDDH-------QKLTEEIARIAKGEAAITATLDQLQARLSSEQGRKS 113 ++ A + L+LLD+ QK +EI++ ITA LD+L + +K Sbjct: 62 FNDFIIA-QQLMLLDEEGRWSQSSQKELDEISQ------RITALLDELSSNRHDAASQKI 114 Query: 114 FAEILALRSKYHEGQQRFLQLASTGATMDATEFLLTTLRQDQENTIVRLKGYIAVGTRMM 173 EI R +Y E + R LQ + A + ++T Q Q+ +++ IAV M Sbjct: 115 ITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQM 174 Query: 174 ERSGEEAAAQYHQKTRIMLAIALLAVASGGACAWWITRSITRPVRHAVGVAQQVAHGNLD 233 +G + + +++ +AL+++A+G W+I RSITRP+ AV A+ +A G+L Sbjct: 175 HNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLT 234 Query: 234 SRIEQGGRDELGQLLEALHQMNGSLTGIVGEVRKGAETIATASSEIAGGNLDLSSRTEQQ 293 I +DE G LL+AL M L IV EV+ G+E+I+TA+++I GN DL++RTE+Q Sbjct: 235 RHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQ 294 Query: 294 AGSLEQTAAAMEELTSTVRQTADNAKAANQLAAEAATVAARSGAVVQEVVATMAGISQAS 353 A S+E+TAA+ME++T+TV+ TAD+ A +L+A AA+V +G ++ +V M I+ + Sbjct: 295 ASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTA 354 Query: 354 CRI 356 R+ Sbjct: 355 NRM 357 >RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 514 Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/163 (56%), Positives = 119/163 (73%) Query: 202 GGACAWWITRSITRPVRHAVGVAQQVAHGNLDSRIEQGGRDELGQLLEALHQMNGSLTGI 261 G A A+ +RSITRP+ AV VA+ VA G+L S E G DE+ QLL AL +M GSL + Sbjct: 197 GLAGAFLFSRSITRPLSRAVEVARTVAQGDLGSAFEARGSDEIAQLLIALREMQGSLAKV 256 Query: 262 VGEVRKGAETIATASSEIAGGNLDLSSRTEQQAGSLEQTAAAMEELTSTVRQTADNAKAA 321 V EVR+ AE +A+AS++IA GNL+LSSRTE+QA SLE+TAA M ELTSTVR ++NA A Sbjct: 257 VSEVRRNAEGVASASAQIASGNLNLSSRTEEQAASLEETAANMGELTSTVRLNSENAVQA 316 Query: 322 NQLAAEAATVAARSGAVVQEVVATMAGISQASCRIVDIIGVID 364 + LA A+ AAR G V+ +VV TM GIS++S ++ +IIGVID Sbjct: 317 STLAGHASDTAARGGKVMTDVVETMQGISESSAKVGEIIGVID 359 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 121/183 (66%) Query: 182 AQYHQKTRIMLAIALLAVASGGACAWWITRSITRPVRHAVGVAQQVAHGNLDSRIEQGGR 241 AQY Q+ +++A+++ AV ITRSITRP+ AV VA+ VA G+L SRI+ G Sbjct: 73 AQYGQQRSLLIALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSRIDAEGT 132 Query: 242 DELGQLLEALHQMNGSLTGIVGEVRKGAETIATASSEIAGGNLDLSSRTEQQAGSLEQTA 301 DE L AL MN LT IV +VR + +IA A+ IA GN DLS RTE QA SL++TA Sbjct: 133 DETSHRLAALADMNTRLTQIVDKVRDSSGSIAGAARPIAAGNADLSQRTEAQASSLQETA 192 Query: 302 AAMEELTSTVRQTADNAKAANQLAAEAATVAARSGAVVQEVVATMAGISQASCRIVDIIG 361 A MEELTSTV+Q ADNA+ A +LAA A+ VA + AVV +VV+TM IS S +I +I Sbjct: 193 AGMEELTSTVKQNADNAQHATELAATASEVAQKGNAVVSQVVSTMQAISDRSGKIAEITS 252 Query: 362 VID 364 +I+ Sbjct: 253 IIE 255 >RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 518 Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 187/363 (51%) Query: 2 LAHLKLGTRLSLGFGLVLALLTGITVLAIVSLFTLHEDTRRIVEDRYPQVLLANDVLLRI 61 + LK+G RL + FG V+ L LA+ L D +I YP+ L N + + Sbjct: 1 MTRLKIGLRLGVAFGFVVLLGLLTAALAVARLNATSGDIEQIASSLYPKTALINTMKINA 60 Query: 62 SENASAMRNLLLLDDHQKLTEEIARIAKGEAAITATLDQLQARLSSEQGRKSFAEILALR 121 + AS +R+ + D + ++ + D LQ R+ ++ G+ F + + Sbjct: 61 ASMASLLRDAWIAPDAAAAKVPLQKLMELRDVSVKLRDDLQKRIRTQSGQDLFKRLQDTQ 120 Query: 122 SKYHEGQQRFLQLASTGATMDATEFLLTTLRQDQENTIVRLKGYIAVGTRMMERSGEEAA 181 +Y + R + + G A + LLT + Q L +A T++M + A Sbjct: 121 ERYGALRARVIAAINAGDKEAARDLLLTEMPAVQSTYFDALDALVAYQTQLMVDTTGRAL 180 Query: 182 AQYHQKTRIMLAIALLAVASGGACAWWITRSITRPVRHAVGVAQQVAHGNLDSRIEQGGR 241 + ++L +A A WITRSI RP+ A+ +A VA G+L +RI+ Sbjct: 181 TASERAAILLLVMAAAAAVLAVFAGVWITRSIVRPLDQALHLADNVAQGDLSTRIDSRAA 240 Query: 242 DELGQLLEALHQMNGSLTGIVGEVRKGAETIATASSEIAGGNLDLSSRTEQQAGSLEQTA 301 DE GQL+ AL M +L IV EV + +TIATAS ++A G+ DLSSRTEQQA SLE+TA Sbjct: 241 DETGQLVRALESMRANLATIVQEVHESTDTIATASGQVAAGSTDLSSRTEQQAASLEETA 300 Query: 302 AAMEELTSTVRQTADNAKAANQLAAEAATVAARSGAVVQEVVATMAGISQASCRIVDIIG 361 A+M ELT TVR+ ADNA+ A+ LA AA+VA A + + TM + + S +I DI G Sbjct: 301 ASMTELTETVRRNADNAREASTLATAAASVATDGQAAIGRLNDTMHRMHEDSGKIADITG 360 Query: 362 VID 364 VI+ Sbjct: 361 VIE 363