BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0018.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 373 e-103 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 116 5e-26 PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 115 1e-25 yagI [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 110 3e-24 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 109 7e-24 >PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 277 Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/268 (70%), Positives = 222/268 (82%), Gaps = 2/268 (0%) Query: 5 EESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVER 64 ++SQDKY VPGLERGL LLCEFSR+D+TL+APELARRL +PRST+FRLL TLE MGFV R Sbjct: 5 DDSQDKYIVPGLERGLLLLCEFSRKDRTLTAPELARRLKLPRSTIFRLLTTLEAMGFVTR 64 Query: 65 ADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAK 124 G +YRLGM+VLRLGFEYLASLELTE+G+PLL+RL DEI Y CNLVVRDGRSIVYVAK Sbjct: 65 --NGNEYRLGMAVLRLGFEYLASLELTELGQPLLNRLCDEIRYPCNLVVRDGRSIVYVAK 122 Query: 125 SVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVEL 184 T +S VNVGTRLPAHATVLGR+LL+DL+L +LR LYPEE LE FS NTP++V+EL Sbjct: 123 VSPSTPLSSSVNVGTRLPAHATVLGRILLQDLSLGELRELYPEEQLEQFSPNTPRSVLEL 182 Query: 185 FDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQLDVIVS 244 FDMVQ D++RGFV EGFFE SISTVAAPVRDHSG V+AA+GATI + HID +++ +VS Sbjct: 183 FDMVQGDRQRGFVQGEGFFEASISTVAAPVRDHSGRVIAAMGATIAAGHIDPERIEGLVS 242 Query: 245 RVRETAAELSRLLDHAPERGAKVVNMWR 272 RVR +A ELS LLD+ + V ++R Sbjct: 243 RVRSSADELSYLLDYRADGQDNVTPIFR 270 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 2/227 (0%) Query: 13 VPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVERADGGRDYR 72 V G +GLR++ F LS ++++ + R+T R L TL +G+ E G+ + Sbjct: 7 VGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEY--DGKFFM 64 Query: 73 LGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFT 132 L +LRLG YL+ L I +P LDRL +G S + V DG IVY+A++ + Sbjct: 65 LLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMRVIS 124 Query: 133 SHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVELFDMVQADK 192 ++ G+RLPA+ +GRVLL L + RT+ + L + T K +L + ++ + Sbjct: 125 INLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEELRRIR 184 Query: 193 ERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQL 239 +GF + + E + ++A PV +H G VVAAL P H++ S L Sbjct: 185 AQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDL 231 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 4 EEESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVE 63 E + D + L RGL ++ F + + L+ +++ R +IPR+ V R L TL ++G+ Sbjct: 24 EAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMQLGYA- 82 Query: 64 RADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVA 123 GR Y L VL LG YL+S L +P+LDRL +++ +C++ +G ++Y+A Sbjct: 83 -TTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDDVLYIA 141 Query: 124 KSVT-QTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVV 182 +S T Q + +NVG+RLPA+ T +GR+LL L L + ++ +S T T Sbjct: 142 RSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRTLYTPE 201 Query: 183 ELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALG 226 L + + +G+ + + E + ++A PVRD +GHV+AAL Sbjct: 202 TLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALN 245 >yagI [K] COG1414 Transcriptional regulator Eco Escherichia coli K12 Length = 252 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 124/247 (50%) Query: 13 VPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVERADGGRDYR 72 + +ER L++L F+ Q L ++++ + + +ST+ LL TL+ G++++ YR Sbjct: 4 IQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYR 63 Query: 73 LGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFT 132 LGM ++ G + S+++ + + L L G + +L + DGR VY+ K + A Sbjct: 64 LGMKLVERGHFVVGSIDIRQKAKGWLTELSRRTGQTTHLGILDGREGVYIEKIEGKLAAI 123 Query: 133 SHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVELFDMVQADK 192 ++ +G RLP HAT +G+VL+ L +L L F+ T + L + + Sbjct: 124 AYSRIGRRLPVHATAIGKVLIAWLGEAELNALLEGYQYTTFTPATLASREALMSALAQTR 183 Query: 193 ERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQLDVIVSRVRETAAE 252 E+G+ L E + VA PV +H V+AAL + + +D ++L ++++ Sbjct: 184 EQGYALDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDDAELANFREQLQQAGLA 243 Query: 253 LSRLLDH 259 LSR L + Sbjct: 244 LSRALGY 250 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 2/219 (0%) Query: 13 VPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVERADGGRDYR 72 V RGL ++ FS + + + E+A + + R+T R L TL +G+ D ++ Sbjct: 9 VQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDS--RFQ 66 Query: 73 LGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFT 132 L VL LG YL++L L I +P L+ L ++G S ++ V DG I+YV + + T Sbjct: 67 LTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRRIMT 126 Query: 133 SHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVELFDMVQADK 192 ++ +GTR PA+AT +GR++L +L +L + E ++ + ++ + + + A + Sbjct: 127 VNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIREEIIATR 186 Query: 193 ERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPS 231 ERG+ L + E + ++AAP+ + G VVA++ + S Sbjct: 187 ERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQS 225