BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0013.p         (331 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3513 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...   415   e-116
mlr6799 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    72   2e-12
PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...    67   6e-11

>PA3513 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 335

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/301 (67%), Positives = 252/301 (83%), Gaps = 1/301 (0%)

Query: 28  QAAPEEVTYLLPAPPNSPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQIGAGNAV 87
           QAAP EVTYLLPAPPNSPAFAPWV+A+ KGYYAD  LKV+F+  KGGVDVAKQIGAGNA 
Sbjct: 22  QAAPREVTYLLPAPPNSPAFAPWVIAREKGYYADLGLKVTFVAGKGGVDVAKQIGAGNAP 81

Query: 88  IGGAIGDTPIVVRANGIPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVTVMSYTDT 147
           +GGAIGDTPIVVRANGIPVKA+AVLGAG VTM+A +   GI ++KDLKGKT+TVMSY+DT
Sbjct: 82  VGGAIGDTPIVVRANGIPVKAVAVLGAGGVTMIATDGTAGIDSVKDLKGKTLTVMSYSDT 141

Query: 148 TYYAFLGSLKTAGLSKTDVQIQAAGPSGVWQLYTSGKSQGFAGVPDWVVNATDAGAKLEL 207
           TYYA L S++ AGL K+DV IQAAGPSGVWQL+++G+SQ  AGVPDWVV+A DAG +++L
Sbjct: 142 TYYALLASMRKAGLGKSDVDIQAAGPSGVWQLFSAGRSQAMAGVPDWVVSAEDAGRQVKL 201

Query: 208 LDNGG-FKSMAQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDYVAALPTY 266
           L     F+SMAQAILASD+ I+K PE++  +VRATL GM+DI+ DP+ AA  + AA+P Y
Sbjct: 202 LPGSEVFESMAQAILASDEAIEKQPEVVGGVVRATLMGMRDIIADPRQAAATFAAAVPAY 261

Query: 267 KGKEASIQTTFEMYNKYVYASQKTLGQIDPSRMDAVQKFYVSEGIVSKATPVNELFTNQF 326
           KG+EAS++    +Y ++VYA+Q+ LG IDP R+D V++FYVSEGIV + TP++EL+TN+F
Sbjct: 262 KGREASLERVLRLYVEHVYANQQPLGHIDPQRLDKVRRFYVSEGIVGRETPLDELYTNRF 321

Query: 327 V 327
           V
Sbjct: 322 V 322


>mlr6799 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Mlo Mesorhizobium loti
          Length = 336

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 36/303 (11%)

Query: 48  APWVLAQHKGYYADENLKVSFIV-AKGGVDVAKQIGAGNAVIGGAIGDTPI--VVRANGI 104
           A + + + KG++A  ++ V+ I    G  D  + +G  NA  G   GD P   V R+  +
Sbjct: 44  AMFFVGKEKGFFAKNDIDVAEIRKGSGSPDAMRLVGNENADFG--FGDLPTLAVARSQNV 101

Query: 105 PVKAIAVLGAGSVTMVAANPAEGIKTLK-----DLKGKTVTVMSYTDTTYYAFLGSLKTA 159
           PV A+A +   S   + +      KTLK     DLKG T+ +     +TY  F G L   
Sbjct: 102 PVVALAAVNQHSPLGIISLA----KTLKLAKPSDLKGLTIGIHP-AGSTYIFFKGFLAAN 156

Query: 160 GLSKTDVQIQAAGPSGVWQLYTS-GKSQGFAGVPDWVVNATDAGA------KLELLDNGG 212
           GL++ D+ + +  P   ++ Y   G+ Q   G  D  V   +A A       + +  + G
Sbjct: 157 GLTEKDMTLNSVSPP--YESYLLLGRVQTVVGYVDAEVPELEAKAGGPGSLSIMMGSDHG 214

Query: 213 FKSMAQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDYVAALPTYKGKE-- 270
           +K+    +  S   IK  PE++ R V+A       ++  P+ AA+    A P Y  K+  
Sbjct: 215 WKAYGSGLFTSQKMIKDKPEIVARFVKAYREAFDYVVAHPEEAAEITAKAAPGYADKKDV 274

Query: 271 ------ASIQTTFEMYNKYVYASQKTLGQIDPSRMDAVQKFYVSEGIVSKATPVNELFTN 324
                 A I +TF   +      +  LG +  ++ +   K    +G++  A   +++FT+
Sbjct: 275 LLAQINADIASTFTSPD----TKEHGLGWMTKTQWEETLKTLTDQGVLKAALSADDVFTD 330

Query: 325 QFV 327
           +F+
Sbjct: 331 KFL 333


>PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 333

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 47  FAPWVLAQHKGYYADENL-----KVSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRA 101
           +AP  LA  K  + +++L     +V ++ ++G     + + AG+       G   ++ RA
Sbjct: 39  YAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGLAAVLARA 98

Query: 102 NGIPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGL 161
           NG PV+ + V      T +       I++L +LKG+ V     TD  Y   L SL + GL
Sbjct: 99  NGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTD-PYLFLLRSLHSVGL 157

Query: 162 SKTDVQI-QAAGPSGVWQLYTSGKSQGFAGV-PDWVVNATDAGAKLELLDNGGFKSMAQA 219
            K D++I     P G   L   G+   +AG+ P    +   AG++L L  N GF S    
Sbjct: 158 DKNDLRIVHLQHPDGRVAL-EKGQVDAWAGLDPHMAASELQAGSRL-LYRNLGFNSYG-V 214

Query: 220 ILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAA 256
           +   +D  +++P+L+++++ A  +    ++  P  AA
Sbjct: 215 LNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAA 251