BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0010.p         (118 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...   108   3e-24
RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   105   2e-23
RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    99   2e-21
RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    99   2e-21
Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher...    97   1e-20

>YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 649

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 80/111 (72%), Gaps = 2/111 (1%)

Query: 1   VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60
           V  V AG  LV  AG TM+++V+S+  V D+M+EI +AS EQS GI+Q+++AIS+MD  T
Sbjct: 519 VSQVNAGTSLVKNAGNTMEEIVRSVSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTT 578

Query: 61  QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAPARETVMHPR 111
           QQNAALVEESA+AA S+A+QA  L  AV+VFRL + + A    R  V+ P+
Sbjct: 579 QQNAALVEESAAAADSLAEQAILLAQAVAVFRLSEDEGATDEGR--VVTPK 627


>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 76/93 (81%)

Query: 1   VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60
           VE VE G  LVD AG TM+Q+V +IQ+V+++++EI++AS+EQSSG+SQ+  A+SQMDE T
Sbjct: 421 VEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEAT 480

Query: 61  QQNAALVEESASAAQSMAQQADSLRDAVSVFRL 93
           QQNAALVE+SA+AA S+  QA  L  AV+VF+L
Sbjct: 481 QQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513


>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 69/93 (74%)

Query: 1   VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60
           V HV  G   V+EAGQ +  VV  IQ V +++SEI+A+S EQS GI QIN AI+QMD+ T
Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKAT 480

Query: 61  QQNAALVEESASAAQSMAQQADSLRDAVSVFRL 93
           Q+NA+LVEESA+AAQ++  QA+ L D VS F+L
Sbjct: 481 QENASLVEESATAAQALQDQANQLADMVSTFKL 513


>RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 514

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 80/93 (86%)

Query: 2   EHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVTQ 61
           E VEAG +LV EAG  +D++V S+Q+V  ++SEI++AS+EQS+GI Q+NIA+ Q++EVTQ
Sbjct: 416 ERVEAGARLVQEAGGIIDEIVASVQRVTQIVSEISSASAEQSTGIEQVNIAVGQIEEVTQ 475

Query: 62  QNAALVEESASAAQSMAQQADSLRDAVSVFRLE 94
           QNAALVEE+++AAQ MA QAD+LR AV++FR++
Sbjct: 476 QNAALVEEASAAAQQMADQADALRRAVAIFRVD 508


>Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 533

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 8/110 (7%)

Query: 1   VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60
           V  V+ G KLV+ A  TM  +V S+ +VND+M EI +AS EQ  GI Q+  A+SQMD+VT
Sbjct: 421 VNRVQQGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVT 480

Query: 61  QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQ--------AQPAVAP 102
           QQNA+LVEE+A A + +A QAD L   V+VF LE+        AQ  +AP
Sbjct: 481 QQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESAQLQIAP 530