BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0009.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5422 [E] COG0765 ABC-type amino acid transport system, permea... 170 2e-42 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 135 5e-32 CC1440 [E] COG0765 ABC-type amino acid transport system, permeas... 133 4e-31 lin2352_2 [E] COG0765 ABC-type amino acid transport system, perm... 125 5e-29 AF0232 [E] COG0765 ABC-type amino acid transport system, permeas... 124 2e-28 >mll5422 [E] COG0765 ABC-type amino acid transport system, permease component Mlo Mesorhizobium loti Length = 224 Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 139/220 (63%), Gaps = 1/220 (0%) Query: 3 ALLQNFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAV 62 +L+ FFN +V LP LL G T+ L +L I IG+ GLL++L+ + +AV Sbjct: 2 SLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLAV 61 Query: 63 AVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVP 122 Y D FR+ P LV+LILIY+ PFLG+ L + F F S+Y AEV R+GIES+P Sbjct: 62 G-YTDIFRALPVLVVLILIYYALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIP 120 Query: 123 SGQMEAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVA 182 GQ EA+++ GL L V++PQA+R +P + N + + K T++AS VALPELL+ A Sbjct: 121 KGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVSMFKDTSLASTVALPELLKEA 180 Query: 183 RDAQSLVYNPSPIVLAALLYLALLLPLVRWLSRLEHRGRT 222 +AQSL NPSP++ AAL+YL L P+VR +S LE R +T Sbjct: 181 TNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKT 220 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 2/203 (0%) Query: 18 LPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVL 77 LP LL G T+ L+ L + IG+A G+ + + S+ R +R +VYV+F R P +V Sbjct: 12 LPLLLKGALRTLQLTSLAVLIGLAIGIFVGM-GRLSKYRIIRYPSSVYVEFLRGTPLMVQ 70 Query: 78 LILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRT 137 L L+YFG P LGLE + A + N+ +Y AE++RAGI+SVP GQ EAARS G+S Sbjct: 71 LFLVYFGLPELGLEFDRFTAAVIALGINSGAYVAEIVRAGIQSVPKGQYEAARSLGMSHA 130 Query: 138 QALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNPSPIVL 197 QA+ +VI+PQA R+ LP L I + K +++A V+ EL+R A+ S + PI Sbjct: 131 QAMIYVILPQAFRHILPALGNEFIALAKDSSLAMVIGTVELMRSAQYIVSRTFMSFPIYG 190 Query: 198 A-ALLYLALLLPLVRWLSRLEHR 219 AL+Y A+ + R + +E R Sbjct: 191 GVALIYFAITFSVSRLVKFVEGR 213 >CC1440 [E] COG0765 ABC-type amino acid transport system, permease component Ccr Caulobacter vibrioides Length = 219 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 2/211 (0%) Query: 10 NLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAVAVYVDFF 69 L++ RQ P LL G T+ LS++ + IGV G LLAL+ SRS +R VYV F Sbjct: 4 GLDLLRQSAPLLLKGAGYTIVLSVIGMSIGVVLGFLLALMRL-SRSALLRWPAGVYVSAF 62 Query: 70 RSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAA 129 R P LV L LIY+G P GLE+P L+A +GF N ++Y E+LR+ I +V GQ EAA Sbjct: 63 RGTPLLVQLFLIYYGLPQFGLEMPPLVAAGIGFSLNVAAYSCEILRSAIAAVDKGQWEAA 122 Query: 130 RSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLV 189 G+SR Q L VI+PQA R A+ L + I ++K T++A+ + +PEL R A+ + Sbjct: 123 SVLGMSRGQTLRRVILPQAARTAVAPLSNSFISLVKDTSLAATIQVPELFRQAQLITART 182 Query: 190 YNPSPIVL-AALLYLALLLPLVRWLSRLEHR 219 Y + L AA +Y L L +RLE R Sbjct: 183 YEIFTLYLAAAAIYWILSTILAAAQTRLERR 213 >lin2352_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 215 Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 123/210 (58%), Gaps = 2/210 (0%) Query: 14 YRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAVAVYVDFFRSFP 73 Y + + + G T+ L+ + + G G LLAL+ +++R +R A Y++F R P Sbjct: 5 YEKYGNYFITGTLITIALAAIGVLCGAILGSLLALMKL-AKTRWLRWPAACYIEFVRGTP 63 Query: 74 PLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTG 133 L+ + +++FG +G+++ ++ + N+++Y AE++RAGI +V GQMEAARS G Sbjct: 64 LLIQIFIVFFGTQIIGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARSLG 123 Query: 134 LSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNPS 193 +++ ++ ++I+PQAV+N LP L + VIK ++I SV+ + EL+ + Q + P Sbjct: 124 MTQGASMRYIILPQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGASFKPF 183 Query: 194 -PIVLAALLYLALLLPLVRWLSRLEHRGRT 222 P+++ +L+Y L L R L E R RT Sbjct: 184 IPLIITSLIYFVLTFSLSRLLGVAERRMRT 213 >AF0232 [E] COG0765 ABC-type amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 224 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 2/214 (0%) Query: 7 NFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAVAVYV 66 N F+++++ ++LP L G T+ L+L+ I G+ G + L I+ A YV Sbjct: 5 NQFDIDLFIRILPDLAFGASVTLKLTLISIFFGLIIGTIAGLGRVSKNPLPFAISTA-YV 63 Query: 67 DFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQM 126 + R P LV ++++YFG P +G+ L A + + +Y AE++RAGIES+P GQM Sbjct: 64 EVIRGTPLLVQILIVYFGLPAIGINLQPEPAGIIALSICSGAYIAEIVRAGIESIPIGQM 123 Query: 127 EAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQ 186 EAARS G++ QA+ +VI PQA RN LP L I ++K +++ SV+++ EL RV R Sbjct: 124 EAARSLGMTYLQAMRYVIFPQAFRNILPALGNEFIALLKDSSLLSVISIVELTRVGRQIV 183 Query: 187 SLVYNP-SPIVLAALLYLALLLPLVRWLSRLEHR 219 + +N +P + AL YL + +PL R ++ + + Sbjct: 184 NTTFNAWTPFLGVALFYLMMTIPLSRLVAYSQKK 217