BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0006.p         (153 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0841 [E] COG1126 ABC-type polar amino acid transport system, ...   138   5e-33
AF0680 [E] COG1126 ABC-type polar amino acid transport system, A...   137   9e-33
lin2353 [E] COG1126 ABC-type polar amino acid transport system, ...   125   5e-29
CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ...   124   6e-29
SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ...   123   1e-28

>lin0841 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Lin Listeria innocua
          Length = 242

 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 83/109 (76%), Gaps = 3/109 (2%)

Query: 8   LEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVVD 67
           L++ GL KS+  N VL+GID+ V+ G+++CVIGPSGSGKST LRC N LEE +AG++VVD
Sbjct: 4   LKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKSTFLRCMNNLEEITAGEVVVD 63

Query: 68  GQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLA---LKKVQR 113
             +I   + D+N VR+ IGMVFQ FNL+PH+SVL N+ LA   LKK+ +
Sbjct: 64  DFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITLAPVELKKMDK 112


>AF0680 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Afu Archaeoglobus fulgidus
          Length = 242

 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 86/107 (80%)

Query: 8   LEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVVD 67
           LEI+ LHK +    VL+G+ ++V  G+++ +IGPSGSGKST+LRC NRLEEP++G+I++D
Sbjct: 4   LEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILLD 63

Query: 68  GQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQRF 114
           G DI +++ D+N VRQ+IG+VFQQFNL+PH++ L NV LA  K+++ 
Sbjct: 64  GVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKM 110


>lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Lin Listeria innocua
          Length = 241

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 79/106 (74%)

Query: 7   ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66
           ++ I  LHK +    VL+GIDL +  G+++ VIGPSGSGKST LRC N LE+P+ G I+ 
Sbjct: 1   MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60

Query: 67  DGQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQ 112
           + +D+M  +T++N +RQK+GMVFQ FNL+PH +VL N+MLA  KV+
Sbjct: 61  ENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVK 106


>CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Cac Clostridium acetobutylicum
          Length = 245

 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 76/100 (76%)

Query: 8   LEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVVD 67
           +E+  L KSY  N VL+ I+L +   +++C+IGPSGSGKST+LRC NRLEE +AGQ+++D
Sbjct: 7   IEVKELKKSYGSNEVLKEINLTIDRSEVVCIIGPSGSGKSTLLRCMNRLEEITAGQLMID 66

Query: 68  GQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLA 107
           G+DI     +++ +R+ +GMVFQ FNL+PH+SVL N+  A
Sbjct: 67  GKDISDKNINIDKLRENVGMVFQHFNLFPHLSVLKNITFA 106


>SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Spy Streptococcus pyogenes M1 GAS
          Length = 244

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 3   LAAPILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAG 62
           +   I+ I  LHK Y  N VL+GIDL + PG+++ +IGPSGSGKST+LR  N LE P+ G
Sbjct: 1   MTEAIISIKDLHKYYGHNEVLKGIDLDIMPGEVVVIIGPSGSGKSTLLRTMNLLEVPTKG 60

Query: 63  QIVVDGQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLA 107
           QI  +G DI   + D+ ++R+K+GMVFQQFNL+P+M++L N+ L+
Sbjct: 61  QIRFEGIDITDKKNDIFSMREKMGMVFQQFNLFPNMTILENITLS 105