BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0005.p (615 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yqiX [ET] COG0834 ABC-type amino acid transport/signal transd... 119 1e-26 AF0231 [ET] COG0834 ABC-type amino acid transport/signal transdu... 113 2e-24 DR2610 [ET] COG0834 ABC-type amino acid transport/signal transdu... 108 3e-23 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 105 2e-22 STM2355 [ET] COG0834 ABC-type amino acid transport/signal transd... 105 3e-22 >BS_yqiX [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Bsu Bacillus subtilis Length = 255 Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%) Query: 363 LRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPGLNAKKYD 422 L G A + P K G + GF+++L + LA++ G +IE++ +F+ L+ L +K+ D Sbjct: 34 LIMGTSADYKPFEY-KEGDNIVGFDVELAKALAKKAGYEIEVQDMDFNSLITALKSKQVD 92 Query: 423 FVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKTISVNKGSAYELW 482 VL+ +T TPER K + F++ Y ++ V KK + I +L DLKGKT+ V GS E Sbjct: 93 LVLSGMTPTPERKKQVDFSDVYYTANHMIVSKKDSG-IQSLKDLKGKTVGVQLGSIQEEK 151 Query: 483 ARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAVQTTYTVKTGL 542 ++ +P+YGFK + +D VQ ++S R DA + VA K N +Q G Sbjct: 152 GKELSPEYGFKTEDRNRISDLVQEIKSDRFDAAIIEDIVAEGYFKSNDDLQ-------GF 204 Query: 543 VW----------ALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWF 580 V A+AFR D ++ D ALK M+ +G L K+ +KWF Sbjct: 205 VIPDAKAEEAGSAIAFRKDSEL-TDKFNKALKEMEDNGELEKLKKKWF 251 >AF0231 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Afu Archaeoglobus fulgidus Length = 264 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 357 MAQGGPLRTGVDATFAPHAMV-KLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPG 415 + + G L G D + P + G GF+IDL +E+A+R+G + + T + G++PG Sbjct: 34 LVEPGYLTVGSDIAYPPFEFTDEKTGEYAGFDIDLMKEIAKRMGLEAKFVNTAWDGIIPG 93 Query: 416 LNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKTISVNK 475 L A KYD + + +T T ERAK + F++ Y + + + I ++DL GK ++V + Sbjct: 94 LLAHKYDVICSAMTITEERAKQVDFSDPYFEAKQVIITRADETDIQDVEDLNGKVVAVQQ 153 Query: 476 GSAYELWARDNAPKYGFKYDV--YGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAVQ 533 G+ + A+ + G + ++ + +A+ AVQ G ADA + + VA AAK+NP + Sbjct: 154 GTTGDFAAQRLKDEKGIQLEIKRFEGTPEALMAVQKGDADAAIIDNFVAYIAAKENPGL- 212 Query: 534 TTYTVKTGLVWA-----LAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFG 581 Y + +A +A D+ + LK +K+DGT KI KWFG Sbjct: 213 --YRIVESDEFAPEYYGIAVNKDNPALLEKINEVLKEIKEDGTYDKIYNKWFG 263 >DR2610 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Dra Deinococcus radiodurans Length = 253 Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 5/252 (1%) Query: 330 LVLPSKSSLKYSLLAVLSASALLSAGAMAQGGPLRTGVDATFAPHAMVKLGGGLQGFNID 389 + L S S+L ++LA + +A ++ + G L + T+ P + G + GF + Sbjct: 1 MKLKSVSTLALAMLAFGAPAAARDLTSIKKSGTLVVATEPTYPPFTYTQ-GKKIVGFEAE 59 Query: 390 LGEELARRLGRKIEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDY 449 L E LA++LG K+E + + F L+ GL +YD V+A TPER KA+ F+ + + Sbjct: 60 LAELLAKQLGVKVEWKSSSFDTLLIGLGQGRYDMVIASHGITPERQKAVDFSNPHYCSGG 119 Query: 450 TFVIKKGAAPINALDDLKGKTISVNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQS 509 V K G L D+KGK ++V G+ Y AR + P G Y NN DA+QA+ + Sbjct: 120 VLVSKPGGP--KTLADMKGKKLAVQLGTTYATRAR-SLPGLG-NIQTYPNNTDALQALMA 175 Query: 510 GRADANLAGSTVAAWAAKQNPAVQTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQD 569 GR DA L VA A K+ + +AF+ D+K A ALK ++ D Sbjct: 176 GRTDAYLTDRFVALEARKKTGGKLQIGALVFQEKIGIAFQKDNKSLTSAVNAALKKVQAD 235 Query: 570 GTLGKIAQKWFG 581 G+ K+++K+FG Sbjct: 236 GSYKKLSEKYFG 247 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Tma Thermotoga maritima Length = 246 Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 12/245 (4%) Query: 343 LAVLSASALLSAGAMAQ---GGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLG 399 +++L S ++ +GA+ + G L G+ A F P V G + GF++DL +E+ARRLG Sbjct: 7 VSILLVSIVIFSGAIDEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLG 66 Query: 400 RKIEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGA-- 457 +++I F GL+P L KK D +++ +T T ER K + F++ Y D V++K + Sbjct: 67 VELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDF 126 Query: 458 APINALDDLKGKTISVNKGSAYELWARDNAPKY-GFKYDVYGNNADAVQAVQSGRADANL 516 P +DL GKT++V G+ ++ KY G K + DA ++ GRADA + Sbjct: 127 RP-KTYEDLVGKTVAVQIGTTGDI----EVSKYDGIKVVRFDKFTDAFLELKRGRADAVV 181 Query: 517 AGSTVAAWAAKQNPAVQTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIA 576 S A +NP + + V + + +A R +D + L+ +K+ + Sbjct: 182 LDSATARAFVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELKK-SPYDVLI 240 Query: 577 QKWFG 581 +KWF Sbjct: 241 EKWFS 245 >STM2355 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 260 Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 11/261 (4%) Query: 335 KSSLKYSLLAVLSASALLSAGAMAQGGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEEL 394 K+ L SLL L A+A S A+ Q +R G D T+AP + G GF+IDLG E+ Sbjct: 3 KTVLALSLLIGLGATAA-SYAALPQ--TVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEM 59 Query: 395 ARRLGRKIEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIK 454 +R+ K ++F L+P L AKK D +++ ++ T +R + + F++ D + Sbjct: 60 CKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAA 119 Query: 455 KGAAPINALDDLKGKTISVNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADA 514 KG+ L+ LKGK + V +GS E +A DN G Y N + +GR DA Sbjct: 120 KGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDA 179 Query: 515 NLAGSTVAAWAAKQNPAVQTTY----TVKT----GLVWALAFRLDDKVGRDAAGMALKCM 566 L A+ + PA + +VK G + R DD + A AL + Sbjct: 180 ALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTEL 239 Query: 567 KQDGTLGKIAQKWFGYTPAAD 587 +QDGT K+A+K+F + D Sbjct: 240 RQDGTYDKMAKKYFDFNVYGD 260