BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0091.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua     64   7e-11

>lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua
          Length = 295

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query: 21 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFER 70
          M+   L+YF +V R   +T A+E LHVA SAVSRQI K+EEE GVPLF+R
Sbjct: 1  MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELGVPLFDR 50