BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0078.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li...   189   2e-48
PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik...   169   2e-42
RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li...   147   1e-35
STM3177 [TK] COG0745 Response regulators consisting of a CheY-li...   144   1e-34
YPO3507 [TK] COG0745 Response regulators consisting of a CheY-li...   140   8e-34

>RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 246

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/160 (62%), Positives = 122/160 (76%), Gaps = 9/160 (5%)

Query: 1   MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYA---------MLLLD 51
           MRVLLVEDD M+GEAVRKGLRQDGF IDWV+DG++A  A+     A         ++LLD
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63

Query: 52  LGLPQKDGLAVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSAR 111
           LGLP++DGL V+  +R RG  +P+LI TARDAVADRVAGL+AGADDYL+KPFDL+EL+AR
Sbjct: 64  LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123

Query: 112 MRALSRRQAGRAESLVQVREVVLNPATHEVTVGGKPVNLS 151
           M AL RRQ GRA+ L++  EV+LNP T EV   G P+ LS
Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLS 163


>PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 221

 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 117/151 (77%)

Query: 1   MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60
           MR+LL EDD ++G+ +R GLR +G T++WV DG +A+ AL T+++ +L+LD+GLP++ GL
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120
            +LR LR +G   PVL+ TARD VADRVAGLD+GADDYL KPFDL+EL AR+RAL+RR  
Sbjct: 61  DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151
           GRA   +   E+ L+PATH+VT+ G+ V L+
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELA 151


>RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 221

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 110/152 (72%), Gaps = 1/152 (0%)

Query: 1   MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60
           MRVLL+EDDPM+G  V   LR   + +DWV+DG++A      + Y +LLLDLGLP +DG 
Sbjct: 1   MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60

Query: 61  AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120
           AVLRTLR R + +PVLI TARDAV +RV GLD GADDY++KPF++ EL ARMRA+ RR+ 
Sbjct: 61  AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120

Query: 121 GRAESLVQVREVVLNPATHEVTVG-GKPVNLS 151
           G A  ++    + L+PATHEV  G G+PV LS
Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLS 152


>STM3177 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sty
           Salmonella typhimurium LT2
          Length = 219

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 102/151 (67%)

Query: 1   MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60
           MR+LLVEDD ++G+ ++ GL + GF++DW  +G+    AL +  Y  ++LDL LP  DG 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120
            +LR  RE+G   PVLI TARDA+A+RV GL  GADDYL KPF L E++AR+ AL RR +
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151
           G+A S ++  +V LNP     T+ G+P+ L 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALK 151


>YPO3507 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ype
           Yersinia pestis
          Length = 220

 Score =  140 bits (354), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 102/151 (67%)

Query: 1   MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60
           M++L+VEDD ++   +   L  +G+  D       A   L+T  Y+M++LDLGLP +DG 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGT 60

Query: 61  AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120
            +LR  R +   +PVLI TARDA+ DRV GLDAGADDYL+KPF L EL AR+RAL RR  
Sbjct: 61  LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120

Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151
           G++++LVQ  ++ LN +T +V + G+P+ ++
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEIT 151