BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0077.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li...    97   1e-20
RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li...    90   2e-18
ygiX [TK] COG0745 Response regulators consisting of a CheY-like ...    84   5e-17
ZygiX [TK] COG0745 Response regulators consisting of a CheY-like...    82   2e-16
ECs3907 [TK] COG0745 Response regulators consisting of a CheY-li...    82   2e-16

>RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 246

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 4   ASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVR 63
           +  EFA+LHA + RPG V S AQL++ LYGWD+ + SN VEV+IHALRKK+GS FI+N+R
Sbjct: 163 SGREFAVLHALLSRPGKVWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIR 222

Query: 64  GVGYLVP 70
           GVGY++P
Sbjct: 223 GVGYVIP 229


>RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 221

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query: 4   ASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVR 63
           +  EFALL A M RPG +LSR +LEE++YGW   + SNAVE  IHALRKK+G++ IKNVR
Sbjct: 152 SGREFALLQALMLRPGAILSRGELEERIYGWGHEVASNAVEFLIHALRKKLGAESIKNVR 211

Query: 64  GVGYLV 69
           GVG++V
Sbjct: 212 GVGWMV 217


>ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Eco
           Escherichia coli K12
          Length = 219

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 48/67 (71%)

Query: 1   VTRASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 60
           +T    EFALL   M   G VLSR  +EEKLY WD+ + SNAVEVH+H LR+K+GSDFI+
Sbjct: 148 LTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIR 207

Query: 61  NVRGVGY 67
            V G+GY
Sbjct: 208 TVHGIGY 214


>ZygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain EcZ
           Escherichia coli O157:H7 EDL933
          Length = 219

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 47/67 (70%)

Query: 1   VTRASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 60
           +T    EFALL   M   G VL R  +EEKLY WD+ + SNAVEVH+H LR+K+GSDFI+
Sbjct: 148 LTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIR 207

Query: 61  NVRGVGY 67
            V G+GY
Sbjct: 208 TVHGIGY 214


>ECs3907 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ecs
           Escherichia coli O157:H7
          Length = 219

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 47/67 (70%)

Query: 1   VTRASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 60
           +T    EFALL   M   G VL R  +EEKLY WD+ + SNAVEVH+H LR+K+GSDFI+
Sbjct: 148 LTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIR 207

Query: 61  NVRGVGY 67
            V G+GY
Sbjct: 208 TVHGIGY 214