BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0067.p         (223 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF0363 [M] COG2885 Outer membrane protein and related peptidogly...   108   9e-24
CC0201 [M] COG2885 Outer membrane protein and related peptidogly...   104   1e-22
BMEI0786 [M] COG2885 Outer membrane protein and related peptidog...   103   2e-22
SMc00354 [M] COG2885 Outer membrane protein and related peptidog...   103   2e-22
STM3645 [M] COG2885 Outer membrane protein and related peptidogl...   103   3e-22

>XF0363 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Xfa Xylella
           fastidiosa 9a5c
          Length = 242

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 5/149 (3%)

Query: 54  NRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAAT 113
           N  + Q+RA+ + T  TG+ V +  DN + L +P  I+FD G++ +KP+    L   A+T
Sbjct: 91  NYQDRQERALRERTANTGIDVKRDGDN-ITLNLPDGITFDFGKSMLKPQFYGALKNVAST 149

Query: 114 LVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGSHEPL 173
           L E   T + +VG+TD+ GSD +N  LS+ RA     YL  +GV   R  ISG G   P+
Sbjct: 150 LREYNQTMIEVVGYTDSIGSDVVNQRLSEDRAGAVASYLAGQGVQRERMEISGMGKRYPI 209

Query: 174 VPNTSDANRAKNRRVEI----FVAEQQAA 198
             N+++A R+KNRRVEI    F AE   A
Sbjct: 210 ADNSTEAGRSKNRRVEIHLIPFSAENSGA 238


>CC0201 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Ccr Caulobacter
           vibrioides
          Length = 226

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 107/186 (57%), Gaps = 2/186 (1%)

Query: 8   TATGAGIGAGLGGIIGAATGGGGGGRALGGAAIGGAIGAVAGNIWSNRMENQKRAMEQAT 67
           T TGA  GAG+G ++G  T    G +    A IG  IGA+AG    N M+ Q+    ++ 
Sbjct: 38  TGTGALTGAGVGAVLGYLTNTNKGEQGRKNALIGAGIGALAGGAIGNYMDRQQADFRRSL 97

Query: 68  QGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGH 127
           +G+GV + +  D ++ L +PSD++F   R+D++P    VLD  A TL   P TT+ +VGH
Sbjct: 98  EGSGVMIRRNGD-QIVLVMPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGH 156

Query: 128 TDNTGSDAINDPLSQQRAARTRDYLT-TRGVAANRFNISGRGSHEPLVPNTSDANRAKNR 186
            D++G D  N  LS++RA+    YLT   GV  +R  ++G G   P+  N +   RA+NR
Sbjct: 157 ADSSGPDDYNQTLSERRASAVAGYLTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNR 216

Query: 187 RVEIFV 192
           RVEI +
Sbjct: 217 RVEIIL 222


>BMEI0786 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Bme Brucella
           melitensis
          Length = 232

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 54  NRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAAT 113
           N M+ Q+  +    QGTGV VT+  D R+ L +PS+I+FDT +  +K +  P L+  A  
Sbjct: 89  NYMDRQEAELRAQLQGTGVSVTRNGD-RIILNMPSNITFDTDQDQVKSQFYPTLNSVAIV 147

Query: 114 LVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGSHEPL 173
           L +   T V + G TD+TGS + N  LSQ+RAA    YL ++G+   RF + G G+ +P+
Sbjct: 148 LRKFDKTLVDVYGFTDSTGSASYNQALSQRRAASVASYLDSQGIDPRRFAVIGYGASQPI 207

Query: 174 VPNTSDANRAKNRRVEIFVA 193
             N +   RA+NRRVEI ++
Sbjct: 208 ASNATPEGRAQNRRVEIQIS 227


>SMc00354 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Sme
           Sinorhizobium meliloti
          Length = 221

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 1/140 (0%)

Query: 54  NRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAAT 113
           N M+ Q+  +    QGTGV VT+  D R+ L +PS+I+F T R  + P     LD  A  
Sbjct: 78  NYMDQQESELRAQLQGTGVSVTRAGD-RIILNMPSNITFATDRDQVIPAFYSTLDSVAIV 136

Query: 114 LVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGSHEPL 173
           L +   T + + GHTD+TGS + N  LS++RAA   +YL +RGV   R +  G G   P+
Sbjct: 137 LRKFNKTLIDVDGHTDSTGSASYNQGLSERRAASVANYLASRGVDQRRMSAVGYGLERPI 196

Query: 174 VPNTSDANRAKNRRVEIFVA 193
             N ++  RA+NRRVEI +A
Sbjct: 197 ASNATEVGRAQNRRVEISIA 216


>STM3645 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Sty Salmonella
           typhimurium LT2
          Length = 220

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 12  AGIGAGLGGIIGAATGGGGGGRA--LGGAAIGGAIGAVAGNIWSNRMENQKRAMEQATQG 69
           +GIGAG+G ++GA  G     +     GA IG A GA  G      M+ Q+  +    +G
Sbjct: 35  SGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRG 94

Query: 70  TGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTD 129
           TGV VT++ DN + L +P++++FD+  A +KP     L   A  L E P T V +VG+TD
Sbjct: 95  TGVSVTRSGDN-IILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTD 153

Query: 130 NTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGSHEPLVPNTSDANRAKNRRVE 189
           +TGS  +N  LSQQRA      L T+GV A+R   SG G   P+  N++   +A+NRRVE
Sbjct: 154 STGSHDLNMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVE 213

Query: 190 IFVAEQQ 196
           I ++  Q
Sbjct: 214 ITLSPLQ 220