BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0042.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...   102   1e-22
SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphory...   100   1e-21
STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    99   3e-21
YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    98   6e-21
slr0983 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    96   3e-20

>alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
          involved in lipopolysaccharide biosynthesis/translation
          initiation factor 2B, gamma/epsilon subunits
          (eIF-2Bgamma/eIF-2Bepsilon) Nos Nostoc sp. PCC 7120
          Length = 257

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 1  VRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLIKEFFANYFLHQGDVTIDL 59
          ++PKPMVEIGGKPILWHIMK YS HG N+F+I  GYKGY+IKE+FANYFLH  DVT D+
Sbjct: 20 IKPKPMVEIGGKPILWHIMKTYSSHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFDM 78


>SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
          involved in lipopolysaccharide biosynthesis/translation
          initiation factor 2B, gamma/epsilon subunits
          (eIF-2Bgamma/eIF-2Bepsilon) Sme Sinorhizobium meliloti
          Length = 255

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 53/60 (88%)

Query: 1  VRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLIKEFFANYFLHQGDVTIDLA 60
          +RPKPM+EIGG+PILWHIMK YS +GF++FVI LGY+GY+IKE+F+NY LH  DVT D+A
Sbjct: 20 LRPKPMIEIGGRPILWHIMKIYSHYGFSDFVICLGYRGYMIKEYFSNYVLHSSDVTFDMA 79


>STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
          involved in lipopolysaccharide biosynthesis/translation
          initiation factor 2B, gamma/epsilon subunits
          (eIF-2Bgamma/eIF-2Bepsilon) Sty Salmonella typhimurium
          LT2
          Length = 257

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 51/61 (83%)

Query: 1  VRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLIKEFFANYFLHQGDVTIDLA 60
          V+PKPMVEIGGKPILWHIMK YS HG  +F+I  GYKGY+IKE+FANYFLH  DVT  +A
Sbjct: 20 VKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 79

Query: 61 D 61
          +
Sbjct: 80 E 80


>YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
          involved in lipopolysaccharide biosynthesis/translation
          initiation factor 2B, gamma/epsilon subunits
          (eIF-2Bgamma/eIF-2Bepsilon) Ype Yersinia pestis
          Length = 261

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 52/65 (80%)

Query: 1  VRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLIKEFFANYFLHQGDVTIDLA 60
          V+PKPMVEIGGKPILWHIMK YS +G N+FVI  GYKGY+IKE+FANYF+H  D+T  + 
Sbjct: 24 VKPKPMVEIGGKPILWHIMKLYSSYGINDFVICCGYKGYVIKEYFANYFMHMSDITFCMR 83

Query: 61 DXSAV 65
          D   +
Sbjct: 84 DNEMI 88


>slr0983 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
          involved in lipopolysaccharide biosynthesis/translation
          initiation factor 2B, gamma/epsilon subunits
          (eIF-2Bgamma/eIF-2Bepsilon) Syn Synechocystis
          Length = 256

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 1  VRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLIKEFFANYFLHQGDVTIDLA 60
          +RPKPM++IGG+PILWHI+K YS +G N+F+I  GYKGY+IKE+FANYFLH  DVT D+ 
Sbjct: 20 LRPKPMIDIGGRPILWHILKLYSAYGVNDFIICCGYKGYVIKEYFANYFLHMSDVTFDMV 79

Query: 61 DXSAV 65
              +
Sbjct: 80 SNEMI 84