BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0040.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

slr0985 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rel...   181   1e-45
SMb21428 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and re...   167   2e-41
AGl166 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rela...   147   1e-35
CC3633 Non COG                                                        147   1e-35
BMEII0830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and r...   144   1e-34

>slr0985 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Syn Synechocystis
          Length = 189

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 114/177 (64%)

Query: 9   GIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRGMHFQHA 68
           GIAG   V     GD RG  AR FC EEL  V     I Q+N++ TA+ G+VRGMH+Q+ 
Sbjct: 13  GIAGLRTVIRQPIGDRRGFLARLFCAEELKEVGWHKPIAQINHTHTAQGGTVRGMHYQNP 72

Query: 69  PHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHGFQVLEA 128
           P AE KL+ C+ G+V+DV +DLR  SPTFL W+GV L+A ++RALL+PEGCAHGFQ L  
Sbjct: 73  PSAEMKLVTCIRGQVWDVAVDLRVDSPTFLTWQGVVLSADNNRALLIPEGCAHGFQALSD 132

Query: 129 GSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDFDGIPL 185
              L+Y H+  Y P AEGG+   DPR+ I WP     LS RD  HPLL   F G+ L
Sbjct: 133 DVELIYCHSVAYNPMAEGGLNPQDPRLGIEWPQAITELSQRDQNHPLLDSTFLGLSL 189


>SMb21428 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Sme Sinorhizobium meliloti
          Length = 187

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 104/163 (63%)

Query: 8   TGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRGMHFQH 67
           T +AG  V+   + GD RG F+R+FC +EL        I Q+N++ T   G++RGMHFQ 
Sbjct: 17  TPLAGLTVIERKQMGDERGFFSRFFCRDELRDFGADGTISQINHTLTRAKGTIRGMHFQR 76

Query: 68  APHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHGFQVLE 127
            PH E K + CLAG VFDV +D+R  SPT+LQW G  L+  + R++++P G AHGFQ L 
Sbjct: 77  PPHDEAKFVSCLAGAVFDVAVDIRPDSPTYLQWHGEILSGENARSMMIPGGFAHGFQTLS 136

Query: 128 AGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRD 170
               L+YLH  PY P AEGG+   DPR+AI+WPL    +S RD
Sbjct: 137 ENCELVYLHDKPYAPDAEGGLNPLDPRLAISWPLEVAQMSERD 179


>AGl166 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 181

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 100/167 (59%)

Query: 8   TGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRGMHFQH 67
           T I G +VV+++   D+RGSFAR FC  E       S   Q + S +    ++RG+HFQ 
Sbjct: 12  TKIEGLLVVNTIPVRDSRGSFARTFCKREFESNALVSDFSQHSLSLSKLKHTIRGLHFQR 71

Query: 68  APHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHGFQVLE 127
            PH E KL+ C+ G ++DV +DLR+GSPT+LQW G  L+A +     +PEG AHGFQ L 
Sbjct: 72  PPHQETKLVSCVKGSIWDVAVDLRRGSPTYLQWVGTVLSADNGAQFYIPEGFAHGFQSLS 131

Query: 128 AGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHP 174
              ++ YL + PY   +  G+RHD+P + + WP P   +S +DL  P
Sbjct: 132 DDVAVSYLISVPYAEASAAGIRHDEPAIGVEWPAPASVISEKDLGWP 178


>CC3633 Non COG
          Length = 185

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 3   LQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRG 62
           ++ITP  I   ++++  R GD RG F+  F    L      +  VQ N+  +   G  RG
Sbjct: 1   MKITPLAIPEVLLITPARHGDERGWFSETFRQSALEEAGFQAAFVQDNHVRSTTRGIQRG 60

Query: 63  MHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHG 122
           +H+Q  PHA+ KL+RC+ G +FDV +D+RKGSPTF  W G EL+A + + LLVP+G AHG
Sbjct: 61  LHYQKPPHAQDKLLRCVVGSIFDVAVDIRKGSPTFGHWVGAELSAENRQQLLVPKGFAHG 120

Query: 123 FQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSP--RDLQHPLLA 177
           +  L     +LY  T  Y P AEGGVR  DP + I WP+P   ++   RD   PLLA
Sbjct: 121 YVTLSDACEVLYKVTDYYAPQAEGGVRWSDPAIGIEWPIPLNEITANDRDNAAPLLA 177


>BMEII0830 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related
           enzymes Bme Brucella melitensis
          Length = 184

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 97/154 (62%)

Query: 23  DARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRGMHFQHAPHAEKKLIRCLAGR 82
           D RG FAR +C+   A     +   Q + SF+ E G++RG+H+Q+ PH+E KL+ CL G 
Sbjct: 31  DERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQGI 90

Query: 83  VFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHGFQVLEAGSSLLYLHTAPYVP 142
           V+DV++DLR  SPT+ +W GVEL+A +   L +PEGCAHGFQ L     + Y+ + PY P
Sbjct: 91  VWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYAP 150

Query: 143 HAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLL 176
               G+R+DDP + I WP  P  +S +DL  P L
Sbjct: 151 DHAAGIRYDDPALDIPWPEKPSVISQKDLGWPFL 184