BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0028.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3320 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoc...   166   2e-41
VC2767 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoch...   102   4e-22
YPO4124 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoc...    91   1e-18
PA5557 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoch...    90   3e-18
atpH [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochon...    89   3e-18

>RSc3320 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial
           oligomycin sensitivity protein) Rso Ralstonia
           solanacearum
          Length = 178

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 109/144 (75%)

Query: 21  MAQVAAHPEVQALAQNPSVSHDKLAEVFAAALKTPLSVEAQNFVKTLVDNGRLVLLPQIA 80
           M Q+AA P+++A+A +P +S   +A +F +ALK+P+S EA+  V  LV N RL LLP+IA
Sbjct: 34  MGQIAAVPDMKAVADDPKLSKADVAGIFLSALKSPVSHEAKELVGLLVANKRLSLLPEIA 93

Query: 81  EQFHVLKNTAEGSADANIVSAFELSDAQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRV 140
            QFHVL+N +EG+AD  I SAF L  A + D+V+ LE+KFG+KL P VTVD SLIGGVRV
Sbjct: 94  AQFHVLRNASEGAADVEITSAFPLEGAPLTDLVATLERKFGKKLQPHVTVDPSLIGGVRV 153

Query: 141 VVGDEVFDTSVRAKLQQLQAALAA 164
            VGDEV DTSVRA+L Q+Q+AL A
Sbjct: 154 QVGDEVLDTSVRARLAQMQSALTA 177


>VC2767 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial
           oligomycin sensitivity protein) Vch Vibrio cholerae
          Length = 177

 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 22  AQVAAHPEVQALAQNPSVSHDKLAEVFAAALKTPLSVEAQNFVKTLVDNGRLVLLPQIAE 81
           A+VA + ++  L    S S +KLAE+F A     L    QN +K + +NGRL+ +P + E
Sbjct: 36  AEVAKNEQMHELL-TSSGSANKLAEIFIAVCGEQLDGHGQNLIKVMAENGRLLAIPALYE 94

Query: 82  QFHVLKNTAEGSADANIVSAFELSDAQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVV 141
            F VLK   E   D  ++SA ELS+ Q  ++ S LE++  RK+  + +VD +L+GGV + 
Sbjct: 95  HFAVLKQEHEKKVDVEVISATELSEQQRSEIGSKLEQRLERKVQLNCSVDETLLGGVIIR 154

Query: 142 VGDEVFDTSVRAKLQQLQAAL 162
            GD V D S R +L++L  AL
Sbjct: 155 AGDLVIDNSARGRLKRLSDAL 175


>YPO4124 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial
           oligomycin sensitivity protein) Ype Yersinia pestis
          Length = 177

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 1/137 (0%)

Query: 22  AQVAAHPEVQALAQNPSVSHDKLAEVFAAALKTPLSVEAQNFVKTLVDNGRLVLLPQIAE 81
           AQV  + ++  L  + +V+ + ++  F A     L   AQNF++ + +NGRL++LP++ +
Sbjct: 36  AQVTRNEQIAELL-SGAVAPETMSTTFIAVCGDQLDEPAQNFIRVMAENGRLLVLPEVLQ 94

Query: 82  QFHVLKNTAEGSADANIVSAFELSDAQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVV 141
           QF  L+ + E + D  + SA  L+D Q+  + +A+EK+  RK+  +  +D S++ GV + 
Sbjct: 95  QFIQLRASLESTVDVEVSSARALNDEQLAKIAAAMEKRLSRKVKLNCKIDKSVMAGVVIR 154

Query: 142 VGDEVFDTSVRAKLQQL 158
            GD V D SVR +L++L
Sbjct: 155 AGDMVIDGSVRGRLERL 171


>PA5557 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial
           oligomycin sensitivity protein) Pae Pseudomonas
           aeruginosa
          Length = 178

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 76/142 (53%)

Query: 21  MAQVAAHPEVQALAQNPSVSHDKLAEVFAAALKTPLSVEAQNFVKTLVDNGRLVLLPQIA 80
           +A V+    V+ L + P ++    A+         L+  AQNFV+T+ +N RL LLP IA
Sbjct: 35  LAAVSQDDTVRQLLKEPQLTSSAKAQSLIDVCGDKLNAPAQNFVRTVAENKRLELLPTIA 94

Query: 81  EQFHVLKNTAEGSADANIVSAFELSDAQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRV 140
           E +  LK   E S +  + SAF LS  Q   +  AL  +  R++    + D+SLIGGV +
Sbjct: 95  EMYEQLKAEQEKSVEVEVTSAFTLSKEQQDKLAKALSARLSREVRLHASEDASLIGGVII 154

Query: 141 VVGDEVFDTSVRAKLQQLQAAL 162
             GD V D SVR KL +L  AL
Sbjct: 155 RAGDLVIDGSVRGKLAKLAEAL 176


>atpH [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial
           oligomycin sensitivity protein) Eco Escherichia coli K12
          Length = 177

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 71/117 (60%)

Query: 42  DKLAEVFAAALKTPLSVEAQNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSA 101
           + LAE F A     L    QN ++ + +NGRL  LP + EQF  L+  +E +A+ +++SA
Sbjct: 55  ETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISA 114

Query: 102 FELSDAQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQL 158
             LS+ Q+  + +A+EK+  RK+  +  +D S++ GV +  GD V D SVR +L++L
Sbjct: 115 AALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERL 171