BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0013.p (317 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0072 [J] COG0223 Methionyl-tRNA formyltransferase Rso Ralston... 393 e-109 VC0045 [J] COG0223 Methionyl-tRNA formyltransferase Vch Vibrio c... 300 3e-81 PA0018 [J] COG0223 Methionyl-tRNA formyltransferase Pae Pseudomo... 299 6e-81 Zfmt [J] COG0223 Methionyl-tRNA formyltransferase EcZ Escherichi... 297 2e-80 ECs4153 [J] COG0223 Methionyl-tRNA formyltransferase Ecs Escheri... 297 2e-80 >RSc0072 [J] COG0223 Methionyl-tRNA formyltransferase Rso Ralstonia solanacearum Length = 327 Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 246/322 (76%), Gaps = 7/322 (2%) Query: 1 MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGT-PV 59 +++ FAGTPEFA +AL AL+ AG I VL+QPDRPAGRGM LQASPVKQ A+ HG PV Sbjct: 5 LRVAFAGTPEFAQIALAALHQAGLPIVAVLSQPDRPAGRGMHLQASPVKQYAVSHGLGPV 64 Query: 60 AQPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLL 119 QP SLR GKYP A A L + DVMVVAAYGLILP+ VLD+PR GCINIHGSLL Sbjct: 65 LQPPSLRRTGKYPQEAAAAIDALSAQQPDVMVVAAYGLILPQEVLDLPRFGCINIHGSLL 124 Query: 120 PRWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAAL 179 PRWRGAAPIHRAIEAGD ETGIT+MQM+ GLDTG M+ +E VPI DTTG+LHD LAAL Sbjct: 125 PRWRGAAPIHRAIEAGDAETGITLMQMDAGLDTGDMIAMEHVPIGLTDTTGTLHDTLAAL 184 Query: 180 GGKMIVEAIARLEQ-GTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPF 238 GG+M+VEA+ARL Q G+LPATPQP EG YA KIAKEEAALD+++ + L R++ AFNPF Sbjct: 185 GGRMVVEALARLAQDGSLPATPQPAEGVTYAEKIAKEEAALDWSRQSAALLRQVHAFNPF 244 Query: 239 PGATGRFGDTVVKLWQAR--PVKVAQPGEPGQVLSADAQAGIVVACGEGALLLTELQKPG 296 PGA+ +K WQA P + A +PG VL+ADA G+V+ACG GAL +T+LQKPG Sbjct: 245 PGASAELDGVSIKFWQAEALPDRPAD-AQPGAVLAADAD-GVVIACGAGALRVTQLQKPG 302 Query: 297 GKRLPAAEFLKGFPLE-GGRFA 317 GKRLPA EFL+G P+ G RFA Sbjct: 303 GKRLPAREFLQGLPIRPGQRFA 324 >VC0045 [J] COG0223 Methionyl-tRNA formyltransferase Vch Vibrio cholerae Length = 315 Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 151/308 (49%), Positives = 208/308 (67%), Gaps = 9/308 (2%) Query: 1 MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60 ++I+FAGTP+FAA L AL ++ HEI V TQP+RPAGRG +L ASPVK A++H PV Sbjct: 5 LRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY 64 Query: 61 QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120 QP + + + E+ L + D+MVV AYGL+LP+ VLD P+LGCIN+HGS+LP Sbjct: 65 QPENFK--------SDESKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSILP 116 Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180 RWRGAAPI R+I AGD+ETG+TIMQM+ GLDTG M+ I ++PI DT+ S++DKLA LG Sbjct: 117 RWRGAAPIQRSIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIEASDTSASMYDKLAELG 176 Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPFPG 240 + ++E + + QGT A Q + ANYA K++KEEA ++++ +A + R IRAFNP+P Sbjct: 177 PQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEARINWSDAATHIERCIRAFNPWPM 236 Query: 241 ATGRFGDTVVKLWQARPVKVAQPGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300 + + +K+WQAR A PG ++ AD ++GI VA G+ L+L LQ PG K L Sbjct: 237 SHFEVAENSIKVWQARVETRAVTQTPGTIIQAD-KSGIYVATGQDVLVLESLQIPGKKAL 295 Query: 301 PAAEFLKG 308 P + L Sbjct: 296 PVQDILNA 303 >PA0018 [J] COG0223 Methionyl-tRNA formyltransferase Pae Pseudomonas aeruginosa Length = 314 Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 168/308 (54%), Positives = 207/308 (67%), Gaps = 13/308 (4%) Query: 1 MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60 ++I+FAGTPEFAA L+AL H I V TQPDRPAGRG +L S VK A++HG PV Sbjct: 5 LRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRGQKLMPSAVKSLALEHGLPVM 64 Query: 61 QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120 QP SLR N + A D+MVV AYGLILP++VLDIPRLGCIN H SLLP Sbjct: 65 QPQSLR-NAEAQAELAALRA-------DLMVVVAYGLILPQAVLDIPRLGCINSHASLLP 116 Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180 RWRGAAPI RA+EAGD E+G+T+MQME GLDTGPM+L S PI+ DT GSLHD+LAALG Sbjct: 117 RWRGAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGSLHDRLAALG 176 Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPFPG 240 K ++EAIA L GTL Q + A YA K+ K+EA LD+++ A +L R++RAF P+P Sbjct: 177 PKAVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVELERQVRAFTPWPV 236 Query: 241 ATGRFGDTVVKLWQARPVKVAQ-PGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKR 299 D +K+ A + Q G PG +L A ++ G++VACGEGAL LT LQ PGGK Sbjct: 237 CHTSLADAPLKVLGA---SLGQGSGAPGTILEA-SRDGLLVACGEGALRLTRLQLPGGKP 292 Query: 300 LPAAEFLK 307 L A+ Sbjct: 293 LAFADLYN 300 >Zfmt [J] COG0223 Methionyl-tRNA formyltransferase EcZ Escherichia coli O157:H7 EDL933 Length = 315 Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 203/307 (66%), Gaps = 9/307 (2%) Query: 1 MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60 ++IIFAGTP+FAA L+AL ++GH + V TQPDRPAGRG +L SPVK A + G PV Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 64 Query: 61 QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120 QPVSLR QE L+ DVMVV AYGLILP++VL++PRLGCIN+HGSLLP Sbjct: 65 QPVSLR--------PQENQQLVADLQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLP 116 Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180 RWRGAAPI R++ AGD ETG+TIMQM+ GLDTG M+ S PI +DT+G+L+DKLA LG Sbjct: 117 RWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELG 176 Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPFPG 240 + ++ + +L GT Q E YA K++KEEA +D++ SA QL R IRAFNP+P Sbjct: 177 PQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPM 236 Query: 241 ATGRFGDTVVKLWQARPVKVAQPGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300 + VK+W+A + A PG +L A+ Q GI VA G+G L L LQ G K + Sbjct: 237 SWVEIEGQPVKVWKASVIDTATNAAPGTILEANKQ-GIQVATGDGILNLLSLQPAGKKAM 295 Query: 301 PAAEFLK 307 A + L Sbjct: 296 SAQDLLN 302 >ECs4153 [J] COG0223 Methionyl-tRNA formyltransferase Ecs Escherichia coli O157:H7 Length = 315 Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/307 (51%), Positives = 203/307 (66%), Gaps = 9/307 (2%) Query: 1 MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60 ++IIFAGTP+FAA L+AL ++GH + V TQPDRPAGRG +L SPVK A + G PV Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 64 Query: 61 QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120 QPVSLR QE L+ DVMVV AYGLILP++VL++PRLGCIN+HGSLLP Sbjct: 65 QPVSLR--------PQENQQLVADLQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLP 116 Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180 RWRGAAPI R++ AGD ETG+TIMQM+ GLDTG M+ S PI +DT+G+L+DKLA LG Sbjct: 117 RWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELG 176 Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPFPG 240 + ++ + +L GT Q E YA K++KEEA +D++ SA QL R IRAFNP+P Sbjct: 177 PQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPM 236 Query: 241 ATGRFGDTVVKLWQARPVKVAQPGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300 + VK+W+A + A PG +L A+ Q GI VA G+G L L LQ G K + Sbjct: 237 SWVEIEGQPVKVWKASVIDTATNAAPGTILEANKQ-GIQVATGDGILNLLSLQPAGKKAM 295 Query: 301 PAAEFLK 307 A + L Sbjct: 296 SAQDLLN 302