BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0009.p         (234 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2523 Non COG                                                       236   4e-62
STM0777 [S] COG4714 Uncharacterized membrane-anchored protein co...   187   1e-47
PM1919 [S] COG4714 Uncharacterized membrane-anchored protein con...   157   1e-38

>RSc2523 Non COG
          Length = 303

 Score =  236 bits (601), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 145/198 (73%), Gaps = 3/198 (1%)

Query: 1   MSVLTVEKAGYVRDDDAKDWKADDILSNLKEGTEAANAERTQHGIPEIEVTGWAEIPKYD 60
           M V   E +GY++DDDAKDW  DD+  ++KEGT+AANAER + GIP +E+ GW E P YD
Sbjct: 108 MVVAKYEASGYIKDDDAKDWNVDDLFKSIKEGTDAANAEREKRGIPALEIQGWVERPHYD 167

Query: 61  SATHKLVWSAIVANKGK-HDAPSDLSVNYRTLALGREGYLSLTMVSSLDLLQQYKPAAQQ 119
           +A H+L+WS    +KG+  +AP   SVNY T ALGREGY+SL ++++ D +   KPA Q+
Sbjct: 168 AAAHRLIWSMAARSKGQPANAPE--SVNYNTYALGREGYISLNLITARDHVDADKPAVQK 225

Query: 120 LLAAISFNEGKRYIDFNASTDHVAEYGLAALVAGVAIKKLGLFALIAAFFAKFFKVILLA 179
           LLA + F +GKRY DFN  TD VAEYGLAALV G+A KKLGLFA+IAAFFAKF KV +LA
Sbjct: 226 LLANLDFQDGKRYTDFNEKTDKVAEYGLAALVGGIAAKKLGLFAVIAAFFAKFAKVAILA 285

Query: 180 VFGFGAAFKKFFTGKAKT 197
           V GFGAA  K F  K+ T
Sbjct: 286 VAGFGAAIAKLFKRKSST 303


>STM0777 [S] COG4714 Uncharacterized membrane-anchored protein conserved in
           bacteria Sty Salmonella typhimurium LT2
          Length = 302

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 127/191 (66%)

Query: 4   LTVEKAGYVRDDDAKDWKADDILSNLKEGTEAANAERTQHGIPEIEVTGWAEIPKYDSAT 63
           +  + +GYV+DDDAK+W AD+++ NL++GT+ AN +R   GI  IE+ GW E P YD+  
Sbjct: 110 IEYDDSGYVKDDDAKNWDADELMDNLRKGTKEANKDRIAKGIEPIEIIGWIEKPTYDATN 169

Query: 64  HKLVWSAIVANKGKHDAPSDLSVNYRTLALGREGYLSLTMVSSLDLLQQYKPAAQQLLAA 123
           H+L+WSA + + G ++  ++  VNY T  LGREGY SL +V+    +    P A+++L++
Sbjct: 170 HRLIWSAAIQDIGTNEPLNEQGVNYNTYLLGREGYFSLNLVTDRGSVDHEIPLAKRILSS 229

Query: 124 ISFNEGKRYIDFNASTDHVAEYGLAALVAGVAIKKLGLFALIAAFFAKFFKVILLAVFGF 183
           + FN G+RY DFN STD +AEYGLAAL+ G+A KK+GL A++     KF+KV  + V   
Sbjct: 230 VKFNAGQRYADFNESTDKIAEYGLAALIGGIAAKKVGLLAMLGIALLKFWKVTAIGVVAV 289

Query: 184 GAAFKKFFTGK 194
           GA  +K  + K
Sbjct: 290 GALARKLLSRK 300


>PM1919 [S] COG4714 Uncharacterized membrane-anchored protein conserved in
           bacteria Pmu Pasteurella multocida
          Length = 302

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 117/195 (60%), Gaps = 2/195 (1%)

Query: 4   LTVEKAGYVRDDDAKDWKADDILSNLKEGTEAANAERTQHGIPEIEVTGWAEIPKYDSAT 63
           +  +  GYV D +A+ W A  + + L+EG E  N  R + GI EIE+  W + P YD   
Sbjct: 99  ILFDDVGYVSDKEARKWDAQALFTALREGDEEQNKIRRERGIAEIEMVDWIQKPTYDEKN 158

Query: 64  HKLVWSAIVANKGKHDAPS-DLSVNYRTLALGREGYLSLTMVSSLDLLQQYKPAAQQLLA 122
           ++L+W+  +   G +  P  D ++NY T  LGREGY+ L  ++  D ++  +  AQ LL+
Sbjct: 159 NRLIWAVNLKEVGPYANPELDNTINYNTYVLGREGYIELGFITGEDRIKAEQHIAQDLLS 218

Query: 123 AISFNEGKRYIDFNASTDHVAEYGLAALVAGVAI-KKLGLFALIAAFFAKFFKVILLAVF 181
            I FN GKRY DF+ +TD V E+GL +L+ G+ +  KLGLFA+I AF AKF+K++++ + 
Sbjct: 219 RIRFNTGKRYADFDPATDAVYEHGLTSLIGGITLATKLGLFAVITAFVAKFWKILVVVLL 278

Query: 182 GFGAAFKKFFTGKAK 196
             G   K  +  KAK
Sbjct: 279 PLGFVLKGLWRNKAK 293