BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0211.p (327 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 212 9e-55 PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 209 1e-53 PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 197 3e-50 PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 169 6e-42 PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 165 1e-40 >PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 328 Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/327 (41%), Positives = 186/327 (56%), Gaps = 12/327 (3%) Query: 1 MGSERTAPNDDIVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSE-- 58 M R ++ +V AI W+VRL+S A D AC WRAE +HE AWQ++ +L+E Sbjct: 1 MDGTRGRVDEAVVRQAIHWLVRLRSQPADDRLQRACAAWRAEHGEHERAWQQVSALNEEL 60 Query: 59 --RVATLPRALAHGSIGASEARTRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGY 116 R LP +A+G++ +S R RR ALK L + G +A PWQ A Y Sbjct: 61 QGRFKALPGGVAYGTLDSSAQRL--QRRQALKLLSLLVAGGAVAWVGRDSLPWQRLSADY 118 Query: 117 TTRTGERRRITLADGTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHE-ERPSYRPF 175 +T TGERR I L DGT LQLN+ +AVDV +D QRLI L RGE+ + +G + + P++RP Sbjct: 119 STATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRPL 178 Query: 176 LVQTRLGQARALGTRFQLRDAEEGMRLAVYEGAVE---FRSQNENAPVRVDAGRQGLFDA 232 V+T G ALGTRF +R + L+V EG+V F ++ APV +AG+ A Sbjct: 179 RVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRIDAFGARPLQAPV-AEAGQSYRIAA 237 Query: 233 QGLVGRLVAANEQAIAWTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFP 292 G V RL A+AW DG+IV M L +AE+ RY G L C VA L +SGV+ Sbjct: 238 DG-VRRLERPQMDAVAWADGLIVTRDMRLADFLAEVARYRNGYLGCAAEVADLRLSGVYR 296 Query: 293 LDQPARILAAIARTLPVRVDTFTDYWI 319 LD ++L +ARTLPVR+ T +W+ Sbjct: 297 LDDTDKLLQVLARTLPVRLQRHTRWWV 323 >PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 317 Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 182/312 (58%), Gaps = 15/312 (4%) Query: 16 AIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGSIGAS 75 A+ W+V LQ G + +A +RWR P+HE AW+ ++++++R+A + LA +I A Sbjct: 17 AVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWRHIEAVNQRLAGIGTPLALAAINAP 76 Query: 76 EARTRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLADGTLLQ 135 + RR ALKTL + AG A Q W A Y T GERRR+ LADG+ L+ Sbjct: 77 HS---PQRRRALKTLLLVLAAGGSAWGLRESGSLQRWSADYATGVGERRRLALADGSRLE 133 Query: 136 LNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQARALGTRFQLRD 195 LNS TAVDV FD +R + L RGE+ ++TGH+ RP + V + G+ R +GTRF +R Sbjct: 134 LNSDTAVDVRFDAGERRLLLLRGEIQLSTGHDPRPLH----VYSAEGRLRPVGTRFDVRQ 189 Query: 196 AEEGMRLAVYEGAVEFRSQNENAPVRVDAGRQGLFDAQGLVGRLVAANEQAI---AWTDG 252 R+AV+EGAV+ ++ + + +GRQ FD + RL A + AWTDG Sbjct: 190 FAGRTRVAVHEGAVQVENRAGQG-LLLPSGRQLDFDRE----RLGAPQPLPVGSGAWTDG 244 Query: 253 VIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTLPVRVD 312 ++VA M L + +AE+ RY PG+L CDP + GL ISG +PLD RILA + LPV V Sbjct: 245 MLVAAGMRLDEFLAEVARYRPGRLGCDPRIGGLRISGSYPLDDSERILATLPAVLPVEVR 304 Query: 313 TFTDYWITLRPR 324 T YW+ + PR Sbjct: 305 RVTRYWVGVHPR 316 >PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 316 Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 175/313 (55%), Gaps = 11/313 (3%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 I+ A +W+VRLQ +D +AC +WR PQH AW+R + L + + LP ALA + Sbjct: 13 ILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPT 72 Query: 72 IGASEARTRN-NRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLAD 130 +G R R +RR A+K L + G L + + P + W+A T GE+RR+TL D Sbjct: 73 LG----RERGLDRRRAIKHLALVLGGASLGLATWQAEPLRDWLADQRTGVGEQRRLTLPD 128 Query: 131 GTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQARALGTR 190 G+LL LN+ +AVD++FD QRL+RL RGE+ + + R RPF V T + A R Sbjct: 129 GSLLTLNTDSAVDLAFDASQRLVRLLRGEIFV----DSRADPRPFRVATAEARLHAGAAR 184 Query: 191 FQLRDAEEGMRLAVYEGAVEFRSQNENAPVRVDAGRQGLFDAQGLVGRLVAANEQAIAWT 250 F +R R+AV G VE S +++G A G RL A + AWT Sbjct: 185 FNVRQEMAATRVAVLAGRVEL-SPLHGRGRWLESGESVRLGADGEARRL-AFDGLPDAWT 242 Query: 251 DGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTLPVR 310 G+++ADRMPL +++AEL RY G LRCDP +A L +SG +PL R L + T P++ Sbjct: 243 RGMLMADRMPLAEVLAELARYRRGVLRCDPQLARLAVSGAYPLLDLRRTLGMLQATYPLK 302 Query: 311 VDTFTDYWITLRP 323 V TDYWI+L P Sbjct: 303 VRGVTDYWISLVP 315 >PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 323 Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 162/314 (51%), Gaps = 5/314 (1%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 ++ AI W + L SG A +H A RW A P+HE AW++L L +A A + Sbjct: 14 VLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAWEQLGGLDRHLARAANGPARNA 73 Query: 72 IGASEAR-TRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLAD 130 + + AR R RR L + G+ A R+ P + +A + TGE+R +TL D Sbjct: 74 LLSGNARFKRRLRRLGGSALGLVLALGVGLGVANRYVPVRYLLADAYSATGEQRELTLPD 133 Query: 131 GTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQARALGTR 190 T ++LNS +A+DV FD ++R + L GE+L+ T H + RPF+V + G RALGTR Sbjct: 134 ATHVRLNSRSAIDVRFDGERRQVVLLAGEILVETAHGD---PRPFVVSSADGDMRALGTR 190 Query: 191 FQLRDAEEGMRLAVYEGAVEFRSQNENAPVRVDAGRQGLFDAQGLVGRLVAANEQAIAWT 250 F +R E G RL V + AV R++ + + G+Q L QGL A Sbjct: 191 FLVRREEPGTRLTVLQSAVAARAETLSEERVIKEGQQVLILPQGLQASEAAPALAGAW-A 249 Query: 251 DGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTLPVR 310 G++V + L LVAEL RY P L+ DP++A L ++G FPL L A+ +LPVR Sbjct: 250 QGMLVVENARLADLVAELGRYSPALLQVDPSIADLRVTGSFPLKDTRLALQALEPSLPVR 309 Query: 311 VDTFTDYWITLRPR 324 +W + PR Sbjct: 310 SVRHNAWWFEVVPR 323 >PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 340 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 174/318 (54%), Gaps = 20/318 (6%) Query: 3 SERTAPNDDIVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVAT 62 +E AP ++ W++ +Q G + + WR+ P+H+ AW+R + L + + Sbjct: 23 AEAIAPQ--VLRETASWLLLMQEGPLAPAQQAELESWRSRSPEHQRAWRRAERLLANIGS 80 Query: 63 LPRALAHGSIGASEARTRNNRRFALKTLCVATGAGLLAASAARWTPW--QAWMAG----Y 116 LP ALA ++ E + + RR L+ L + + W W Q W G Y Sbjct: 81 LPPALARRAL---ERPSGSGRRAVLRGLALLL-----GGAPLVWWGWRAQVWRDGFGADY 132 Query: 117 TTRTGERRRITLADGTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFL 176 T GERR + L DG+ +++N+ +A+DV +D QRL+RL+RGE+ + T + R RPFL Sbjct: 133 LTAVGERRDLVLEDGSQVEMNTDSALDVRYDAGQRLLRLYRGEIYLRTAADRREPPRPFL 192 Query: 177 VQTRLGQARALGTRFQLRDAEEGMRLAVYEGAVEFRSQNENAPVR---VDAGRQGLFDAQ 233 V+T G RALGT F +R LAVYEGAV+ R + + ++AG++ FD Q Sbjct: 193 VRTEQGLMRALGTAFSVRREGAETVLAVYEGAVQVRPEGAASAADGRVIEAGQRVRFDRQ 252 Query: 234 GLVGRLVAANEQAIAWTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPL 293 +G + +A+E A+AW G++VAD MPL Q EL RY + C+P++ L +SG FP+ Sbjct: 253 -RIGPVESASEAALAWRQGLLVADDMPLRQWAGELMRYGGESIECEPSLDPLRVSGTFPV 311 Query: 294 DQPARILAAIARTLPVRV 311 D LA +A+T +R+ Sbjct: 312 DDLPLALAMLAQTHGLRL 329