BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0207.p (390 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 146 8e-35 CC2462 [T] COG3706 Response regulator containing a CheY-like rec... 127 3e-29 slr1760 [T] COG3706 Response regulator containing a CheY-like re... 125 2e-28 PA0169 [T] COG2199 FOG Pae Pseudomonas aeruginosa 124 3e-28 BH2234 [T] COG3706 Response regulator containing a CheY-like rec... 123 7e-28 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 195 ERDPFIVQQVRVTARLTKFIRNMTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCV 254 ++D I + ++ + ++ + E K + RMA TD LT L NR + + Sbjct: 47 DKDSEIYELKVAVIKMIETLKKILIETSKEKTLYERMALTDPLTGLYNRRVFTEMAEKEL 106 Query: 255 NMANRYGTPFSIILSDVDRFKSINDNYGHLAGDSVLKCVAEILTSNTRSTDVAGRWGGEE 314 A RYG FSI++ D+D FK IND YGH GD VLK ++EIL N R D+ R+GGEE Sbjct: 107 AKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDLVLKKISEILKRNVRGADLVARFGGEE 166 Query: 315 FLVITANTALANAVHLAEKVRMTLAQA--SLPNVRQ--ITASFGVASYAVGETISALLDR 370 F+V+ +NT L AV AE++R + Q LPN + +T S GV++Y E++ L+ Sbjct: 167 FIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNGEKLRVTVSIGVSTYRGHESLEELIKE 226 Query: 371 ADHALYAAKRSGRDRVQA 388 AD ALY AKR G++RV+ Sbjct: 227 ADQALYEAKRKGKNRVEV 244 >CC2462 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Ccr Caulobacter vibrioides Length = 454 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 24/218 (11%) Query: 176 NKVVSRPTQQQAATNVLIAERDPFIVQQVRVTARLTKFIRN-MTEELEKTRAELSRMAFT 234 N ++SRP Q ++ R +Q+ R T ++RN + LE +A T Sbjct: 249 NDILSRPIDPQE-----LSARVKTQIQR----KRYTDYLRNNLDHSLE--------LAVT 291 Query: 235 DQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDRFKSINDNYGHLAGDSVLKCVA 294 DQLT L NR + L V A G P S +L D+D FK IND +GH GD VL+ A Sbjct: 292 DQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFA 351 Query: 295 EILTSNTRSTDVAGRWGGEEFLVITANTALANAVHLAEKVRMTLAQASLP-----NVRQI 349 L SN R+ D+ R+GGEEF+VI +TALA+A+ +AE++RM ++ + + + Sbjct: 352 LRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNV 411 Query: 350 TASFGVASYA-VGETISALLDRADHALYAAKRSGRDRV 386 T S GV++ A G+T ALL RAD +Y AK SGR+ V Sbjct: 412 TISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAV 449 >slr1760 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Syn Synechocystis Length = 315 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 8/178 (4%) Query: 217 MTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDRFKS 276 + +LE L R+A DQLT L NR +L L + A R PFSI+L D+D FK+ Sbjct: 134 LQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYPFSILLCDIDYFKN 193 Query: 277 INDNYGHLAGDSVLKCVAEILTSNT-RSTDVAGRWGGEEFLVITANTALANAVHLAEKVR 335 ND+YGH GD L+ VA+ LT R D+A R+GGEEFL++ NT L A+H+ E ++ Sbjct: 194 YNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNTDLQGAIHIGEDIQ 253 Query: 336 MTLAQASLPNVR-----QITASFGVASYA--VGETISALLDRADHALYAAKRSGRDRV 386 + + ++P+V+ +T S G AS +G L+ AD LY AK GR+R+ Sbjct: 254 AEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAKAQGRNRL 311 >PA0169 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 235 Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 110/199 (55%), Gaps = 6/199 (3%) Query: 190 NVLIAERDPFIVQQVRVTARLTKFIRNMTEELEKTRAELSRMAFTDQLTNLPNRVKLNAV 249 N+ ++ER ++++ AR++ + M +L E S D LT LPNR L Sbjct: 21 NLSLSERYHKQLRRLEKVARISDRYQQMMRDLNLALKEAS---IRDPLTGLPNRRMLLER 77 Query: 250 LSDCVNMANRYGTPFSIILSDVDRFKSINDNYGHLAGDSVLKCVAEILTSNTRSTDVAGR 309 L + + R+G + + + DVD FK +ND +GH +GD VL +A + S R D+ GR Sbjct: 78 LREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIARAMESELREYDLCGR 137 Query: 310 WGGEEFLVITANTALANAVHLAEKVR---MTLAQASLPNVRQITASFGVASYAVGETISA 366 WGGEEFL++ T L +A + E+VR TLA +TAS GV + +GET S Sbjct: 138 WGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGTEALSVTASVGVTEHRIGETYSQ 197 Query: 367 LLDRADHALYAAKRSGRDR 385 ++RAD AL AKRSGRD+ Sbjct: 198 TVNRADAALLDAKRSGRDK 216 >BH2234 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Bha Bacillus halodurans Length = 314 Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 10/195 (5%) Query: 200 IVQQVRVTARLTKFIRNMTEELEKTRAELS---RMAFTDQLTNLPNRVKLNAVLSDCVNM 256 +++Q RL + ++ + E+ EK + ++ R++ D LTNL NR + + +N Sbjct: 117 LLKQESSRKRLEQHVKVLEEQNEKLKGKIQKVDRLSRVDFLTNLMNRRDMQEKIRAEINR 176 Query: 257 ANRYGTPFSIILSDVDRFKSINDNYGHLAGDSVLKCVAEILTSNTRSTDVAGRWGGEEFL 316 + R+G F++ + D+D FK+IND YGH GD VLK L ++ RS+D RWGGEEFL Sbjct: 177 SIRHGRSFTLAIVDIDFFKNINDTYGHDCGDHVLKHFVSTLKNSVRSSDYVSRWGGEEFL 236 Query: 317 VITANTALANAVHLAEKVRMTLAQASLPNVRQ-----ITASFGVASYAVGETISALLDRA 371 ++ T L EK+R + ++ P + + ITA+FG++ Y I L+ A Sbjct: 237 LLFPETKLEEGKRACEKIRQKINES--PVIYKGMSISITATFGISEYRPSVRIEELIKAA 294 Query: 372 DHALYAAKRSGRDRV 386 D ALY K++G+++V Sbjct: 295 DDALYKGKKTGKNQV 309