BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0205.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 182 4e-46 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 165 5e-41 VC0282 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr... 137 2e-32 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 137 2e-32 SMc04227 [NT] COG0840 Methyl-accepting chemotaxis protein Sme Si... 122 4e-28 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 92/190 (48%), Positives = 122/190 (64%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 +VK Y A G ++KE AQ +A +S+RY GYF + S V+++HPIKPE GKD Sbjct: 60 LVKQYDDLARGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKD 119 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTG 120 T KD G S+++ +T AA +P+G F +Y+WP VG VPKT F Y+PWDW +TG Sbjct: 120 QTGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTG 179 Query: 121 AYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAHG 180 AY+DDINAAF+ +L + L ++ LV L V NR + R +GGDPA AAE+ANRIA G Sbjct: 180 AYMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGG 239 Query: 181 DLTPNIEIRP 190 DL+ I RP Sbjct: 240 DLSVEIATRP 249 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 128/191 (67%), Gaps = 1/191 (0%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 ++K Y A+ G ++ EEA+A+ A LK++RYG GYF+++ + V ++HPIKPE+ GK+ Sbjct: 54 VIKEYGQLAQEGKMTVEEAKAQTMARLKTMRYGADGYFSLSTTDAVSVMHPIKPEMVGKN 113 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTG 120 M+ V DP G LF +I + A K G FV Y+WPK G + P PK T+V Y+PWDW++TTG Sbjct: 114 MSAVTDPAGNHLFTDIARTA-KAGGGFVRYLWPKPGSSTPEPKLTYVAYYQPWDWSMTTG 172 Query: 121 AYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAHG 180 Y+DD++AAF +L Q L + V + + ++ + R + R +GGDPA AA++A RIA G Sbjct: 173 LYIDDVDAAFRASLLQSLGLLLGVGLLMTLVVATLARGLQRQLGGDPAYAADIAARIAAG 232 Query: 181 DLTPNIEIRPG 191 DL +E RPG Sbjct: 233 DLAMRVETRPG 243 >VC0282 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 556 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 2/188 (1%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 +++ YA QA G ++ E+AQ A+ A+ +RYG YF + ++ +++HP+KP+L GKD Sbjct: 69 LLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKD 128 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTG 120 + + KDP G +LF+E+ + V Y WPK G PV K ++V +KPW W + TG Sbjct: 129 LRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTG 188 Query: 121 AYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAHG 180 Y+DD+NA ++ L+ + + + + L+ L +I RSI + AT +A G Sbjct: 189 IYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQ--GEG 246 Query: 181 DLTPNIEI 188 DLT + + Sbjct: 247 DLTRQLTV 254 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 107/190 (56%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 + K Y A+A+SGA+ ++EA+ A A L S+RYG GY V +S ++ +HP ++ GK Sbjct: 54 IAKLYHAKAQSGAMGEDEARKTALATLASLRYGTTGYLFVVDSQLILQMHPTLADMVGKS 113 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTG 120 KDP G L+ I AA F Y G +PK +V + PWDWN+++ Sbjct: 114 TAQFKDPTGKPLYPAIVNAAKDKGYGFAEYQGRLPGSDTALPKIGYVKRFAPWDWNISSA 173 Query: 121 AYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAHG 180 +L ++ A++R+L I +VV A+ + +I R++ R +GG+PA A E+A RIA G Sbjct: 174 VFLQEVETAYVRSLIANLIAILVVGGAVTLAMFLIIRNVQRGLGGEPAYATEIARRIADG 233 Query: 181 DLTPNIEIRP 190 DL ++ RP Sbjct: 234 DLAVRVQTRP 243 >SMc04227 [NT] COG0840 Methyl-accepting chemotaxis protein Sme Sinorhizobium meliloti Length = 604 Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 59/135 (43%), Positives = 82/135 (60%) Query: 4 AYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTN 63 AY AQ ++G +++EEAQ A A++++RY GYF V + +++HPIKPEL+G D+T Sbjct: 57 AYHAQEKAGTLTREEAQGCALEAIRAMRYQDSGYFWVNDMHPKMVMHPIKPELDGADLTQ 116 Query: 64 VKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYL 123 KDP G LF+E K FV+Y WPK G +PV K + V ++PW W + TG Y Sbjct: 117 NKDPNGKFLFVEFVKTVQAHGKGFVDYYWPKPGADEPVLKYSHVAGFEPWGWVVGTGVYA 176 Query: 124 DDINAAFIRTLTQMA 138 DD+ A F QMA Sbjct: 177 DDLAAMFRERAWQMA 191