BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0186.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 276 5e-74 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 152 7e-37 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 149 1e-35 RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 145 1e-34 BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 143 4e-34 >PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 291 Score = 276 bits (706), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 139/287 (48%), Positives = 196/287 (68%), Gaps = 3/287 (1%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 M+WD+ R+FLA+ R TLRGAA L +DQAT GRRLA+LE++LG+ LFLRT SGY+ TPA Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE A A +ME+ A +L R+ +GMD RL G VRL+ TD A F+LPAL RL EHP I Sbjct: 61 GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 RV+L +++ + +L KRE DIA+RT+RP+ PDLI R L G++AS Y+++ G+P PG Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRPENPDLILRKLASWPMGLFASADYLRRNGVPVPG 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 +GHD+V+Y + + GE I V + V++ +++ +L G G+ ELP ++ Sbjct: 181 ERFRGHDLVMYEPYWHSQRELTLGGEPIRDGRVVIAVNSNMMVRQALARGLGLCELPLYM 240 Query: 241 GDKTSGLVRIWPQRA--VPYDMWLVLHSDLNRTARVRAVADAIIAAY 285 G++ GLVR+WPQR PY++W+V H DL TARVRAV + ++ A+ Sbjct: 241 GER-DGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAF 286 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 144/278 (51%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 M+WD+ R+FLA+ R G + A++ L I+ AT RR+ ALE L A+L +R P+G T Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE+ AAA +ME Q Q+ +D + G VR+ A D FL P L RL +P++ Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 ++ L + +L++READIA+ RP+ L++ L G+YAS Y+ + G P Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTV 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 LK H + Y + + S E + + + E+S+ + +++++ GIG L ++ Sbjct: 181 DDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYI 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVA 278 + LVR+ P R + W H RVR VA Sbjct: 241 ARQYPELVRLLPDRTIRRAYWTTYHESARDLVRVRTVA 278 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 140/281 (49%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 M+WD+ RIFLA+ R G + A++ L ++ AT RRL LE +L +LF+R +G T Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 G+ AA +ME Q + +D + G VR+ A D FL P L RL +P + Sbjct: 61 GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 ++ L + +L++READIA+ RP+ L+ L G+YAS Y+ G PD Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 LK H + Y + S S GE + + A E+S+ +++++G GIG L ++ Sbjct: 181 EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAI 281 + L+RI P + W H + RVR V D + Sbjct: 241 AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFL 281 >RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 1/287 (0%) Query: 3 WDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPAGE 62 W+ R FLA+ R G+L GAA L + Q TAGR + ALE +LG LF+RT G PT A Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67 Query: 63 MAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKIRV 122 A +E + L R E + G VR+ A+++ L L L +P + + Sbjct: 68 ALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLIL 127 Query: 123 VLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPGTG 182 L S ++ +L +R+ADIAVR RP L+ARH+ + G++A + Y+++RG P Sbjct: 128 ELVPSNRLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRGTPATLDD 187 Query: 183 LKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHVGD 242 L GH ++ Y + + + + + A+ + L +L+AGFGIG + Sbjct: 188 LAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGICQVGLAR 247 Query: 243 KTSGLVRIWPQRAVP-YDMWLVLHSDLNRTARVRAVADAIIAAYEAY 288 + LVR++ P D WL +H DL + R R V +A+ A Y Sbjct: 248 RDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRY 294 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 140/281 (49%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 M+WD+ RIFLA+ R G + GAA L ++ T RRL ALE++L L R +G T A Sbjct: 16 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 75 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE AA +ME + Q+ D + G VR+ A D +FL P L RL Q++P + Sbjct: 76 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 135 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 + L + +L++READIA+ RPD L+AR L +YA ++Y+++ P Sbjct: 136 TIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSP 195 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 L H ++ Y + + S E A EVS+ L ++++AG GIG L + + Sbjct: 196 EDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIGILHSFI 255 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAI 281 LV + P R + WL H RV AV+ I Sbjct: 256 ACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALI 296