BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0176.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana...    71   5e-13
aidB [I] COG1960 Acyl-CoA dehydrogenases Eco Escherichia coli K12      69   2e-12
ZaidB [I] COG1960 Acyl-CoA dehydrogenases EcZ Escherichia coli O...    69   2e-12
ECs5163 [I] COG1960 Acyl-CoA dehydrogenases Ecs Escherichia coli...    69   2e-12
PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug...    69   3e-12

>RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum
          Length = 557

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 42/76 (55%)

Query: 3  THDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGRSEMRELATLANT 62
          TH + NQVPDL  +N + SD  L  A+ R G  WH   L + GE LG       A  AN 
Sbjct: 6  THRVFNQVPDLAHFNPFTSDATLQGALGRLGGGWHADALRAFGETLGSPRTLAWAAEANR 65

Query: 63 QPPVLHTHDRTGHRID 78
           PP LHTH RTG RID
Sbjct: 66 YPPELHTHSRTGERID 81


>aidB [I] COG1960 Acyl-CoA dehydrogenases Eco Escherichia coli K12
          Length = 546

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 45/77 (58%)

Query: 2  HTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGRSEMRELATLAN 61
           TH + NQ   L + NLY SD AL EAV REGA W    LAS G+ LG +E  EL  LAN
Sbjct: 9  QTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLAN 68

Query: 62 TQPPVLHTHDRTGHRID 78
            PP L  +D  G R+D
Sbjct: 69 VNPPELLRYDAQGRRLD 85


>ZaidB [I] COG1960 Acyl-CoA dehydrogenases EcZ Escherichia coli O157:H7
          EDL933
          Length = 546

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 45/77 (58%)

Query: 2  HTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGRSEMRELATLAN 61
           TH + NQ   L + NLY SD AL EAV REGA W    LAS G+ LG +E  EL  LAN
Sbjct: 9  QTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLAN 68

Query: 62 TQPPVLHTHDRTGHRID 78
            PP L  +D  G R+D
Sbjct: 69 VNPPELLRYDAQGRRLD 85


>ECs5163 [I] COG1960 Acyl-CoA dehydrogenases Ecs Escherichia coli O157:H7
          Length = 546

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 45/77 (58%)

Query: 2  HTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGRSEMRELATLAN 61
           TH + NQ   L + NLY SD AL EAV REGA W    LAS G+ LG +E  EL  LAN
Sbjct: 9  QTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLAN 68

Query: 62 TQPPVLHTHDRTGHRID 78
            PP L  +D  G R+D
Sbjct: 69 VNPPELLRYDAQGRRLD 85


>PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa
          Length = 549

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 3  THDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGRSEMRELATLANT 62
          TH++TNQVP L   NLYR DL L E V+R    W +  L   GEL G   M     LAN 
Sbjct: 9  THEVTNQVPSLDGANLYRLDLPLQEWVRRYQGGWAEERLQRYGELAGGPLMAA-GFLANQ 67

Query: 63 QPPVLHTHDRTGHRIDVTE 81
            P  H+HDR G+R+D+ E
Sbjct: 68 HKPEFHSHDRYGNRVDLVE 86