BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0171.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote...    81   5e-16
PA0163 [K] COG2207 AraC-type DNA-binding domain-containing prote...    69   2e-12
PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote...    67   1e-11
PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote...    65   4e-11
PA0864 [K] COG2207 AraC-type DNA-binding domain-containing prote...    60   2e-09

>PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
          Pseudomonas aeruginosa
          Length = 262

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 48/75 (64%)

Query: 11 SAEVDAFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQR 70
          +A ++ +   P +VVA   +     LL  H HRR QLLY   GVMQVRT    W+VPPQR
Sbjct: 3  NASIEQYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQR 62

Query: 71 ALWVPPQVEHEILML 85
          A+W+PP VEHE+ ML
Sbjct: 63 AVWIPPGVEHEVRML 77


>PA0163 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
          Pseudomonas aeruginosa
          Length = 265

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query: 14 VDAFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQRALW 73
          +     LP  V A A  L A    + H H   QL YA+ GV+ V T +G +  PPQRA+W
Sbjct: 14 IPTLARLPRPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAIW 73

Query: 74 VPPQVEHEILMLTRERMRGLFF 95
          +P Q+EHE++  TR  MR L+ 
Sbjct: 74 IPAQLEHEVVTSTRAEMRSLYI 95


>PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 262

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 41/70 (58%)

Query: 37  LTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQRALWVPPQVEHEILMLTRERMRGLFFV 96
           L  H H + Q LYA  G+M++ T  G W++PP RA+W+PP+VEHEI M     MR LF  
Sbjct: 24  LGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFMSGEVHMRTLFIE 83

Query: 97  LPNHYLPRQD 106
            P    P  D
Sbjct: 84  QPETPTPLSD 93


>PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 260

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 20  LPSS--VVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQRALWVPPQ 77
           LPS+  V A+A++    + +  H H R QL++A+ GV+ V T +G W+VPP R +W+P  
Sbjct: 5   LPSTRPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAG 64

Query: 78  VEHEILMLTRERMRGLFFV-LPNHYLPRQDR 107
           +EH +    + RMR LF      H LPR  R
Sbjct: 65  IEHALRFAGQVRMRTLFIAPQARHDLPRDCR 95


>PA0864 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 262

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 26  AFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQRALWVPPQVEHEILML 85
             AR   A   + AH H  GQ+LYAV G+M + TP     VPPQRA+W+PP + H + + 
Sbjct: 18  GVARSYPAGHRVDAHEHAWGQVLYAVSGMMWLETPDEALPVPPQRAVWLPPGLRHAVRVA 77

Query: 86  TRERMRGLFFVLPNHYLPRQDRRRITLASPL 116
           +  +MR ++   P      +DR  + +  PL
Sbjct: 78  SELQMRNIYLS-PELSRGLEDRTLVLVVGPL 107