BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0168.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 333 4e-91 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 325 6e-89 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 307 2e-83 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 294 2e-79 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 293 5e-79 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 333 bits (853), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 185/324 (57%), Positives = 244/324 (75%), Gaps = 5/324 (1%) Query: 1 MAVLVTILAALVLGALISRVL-RRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISA 59 +AVL T+LA + GA I+R + R ++ E +A G+ LT L+ + DE+GR+ A Sbjct: 195 LAVLATLLA-IATGAFITRTITRPINHAMHLAEAVAQGN--LTHLLEVD-TQDEIGRLLA 250 Query: 60 AFNRFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTS 119 A ++ + ++ +R + TI A+ ++ASGN+DLS RTE QASSLE+TAAAMEQLTS Sbjct: 251 ALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTS 310 Query: 120 SVRQNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQ 179 +V+QNADNAQEA+ L+ +AS +A +GG V++ +QTMS IN SS+KIVDII VIDGIAFQ Sbjct: 311 TVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQ 370 Query: 180 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQT 239 TNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI DSV V G Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAK 430 Query: 240 VSQAGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEA 299 V +AG IR VV ++ V+++V+EI+++SREQS GI+Q N+A+ MD+ATQ+NA+LVEE+ Sbjct: 431 VEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEES 490 Query: 300 AAGAQQLQEQAARLAEVVALFRLR 323 A AQ LQ+QA +LA++V+ F+L Sbjct: 491 ATAAQALQDQANQLADMVSTFKLH 514 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 325 bits (834), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 187/307 (60%), Positives = 242/307 (78%), Gaps = 1/307 (0%) Query: 16 LISRVLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAAFNRFVDKVEHVMLDI 75 + +R RRLS+++ A+++I G GDLT+RL G DE+ +I+ +FN F DK+ V+ I Sbjct: 310 MTARAFRRLSMIRDAMDDIGSGSGDLTKRLPADGQ-DEVAQIARSFNAFADKLTAVLQQI 368 Query: 76 REASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRQNADNAQEANTLS 135 R S ++ +A ++IA+GN DLSQRTE QASSLE+TA++ME+LTS V+QNADNA++A++L+ Sbjct: 369 RLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLA 428 Query: 136 QSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAG 195 +AS++A RGG++V QVVQTM IN SS+KI DII VI+ IAFQTNILALNAAVEAARAG Sbjct: 429 VNASDVATRGGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAG 488 Query: 196 EQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQAGSTIRSVVESVR 255 EQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV++V G V QAG T+ +VE+V+ Sbjct: 489 EQGRGFAVVASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVK 548 Query: 256 KVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAGAQQLQEQAARLAE 315 +V+D++ EI++AS EQS GI+Q N AV MDQ TQQNAALVE+AAA A+ L+EQA L + Sbjct: 549 RVTDIMGEISAASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLND 608 Query: 316 VVALFRL 322 V FRL Sbjct: 609 AVGSFRL 615 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/321 (53%), Positives = 227/321 (70%), Gaps = 1/321 (0%) Query: 3 VLVTILAALVLGALISRVLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAAFN 62 VL+T+ A + ++ RRLS V+ A++ I G GDLT RL G+ DE+ +ISA+FN Sbjct: 325 VLLTLAAVGIAAFFTAQSFRRLSQVRDAMDTIGSGGGDLTHRLPVVGN-DEVAQISASFN 383 Query: 63 RFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVR 122 F+DK+ V+L++R + + +AT +I GN DLS RTE+ AS+L++T+AA+ +LT+SV+ Sbjct: 384 TFIDKIGEVLLEVRASVENMKSATGEIEMGNRDLSLRTETSASNLQETSAALTELTTSVK 443 Query: 123 QNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNI 182 +A+ A +A L+ ASE A RGG +V V TM AI SS +I +II VID IAFQTNI Sbjct: 444 NSAEAAVQATRLAGEASEAAVRGGEVVSGAVSTMDAIAQSSSRISEIIGVIDSIAFQTNI 503 Query: 183 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQ 242 LALNAAVEAARAGE GRGFAVVA EVR+LAQRSA AA+EIK LI S V+AG + V Sbjct: 504 LALNAAVEAARAGENGRGFAVVAGEVRTLAQRSAAAAREIKALIQASEASVKAGAERVDA 563 Query: 243 AGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAG 302 AG+T+R +VE +++VS ++ EI A EQS GI Q + +VA MDQATQQNAALVE++ A Sbjct: 564 AGATMREIVEGIQRVSRIIGEIDGAMHEQSAGISQIDRSVAEMDQATQQNAALVEQSTAA 623 Query: 303 AQQLQEQAARLAEVVALFRLR 323 + L EQA LA V LFRLR Sbjct: 624 SSMLNEQAHGLARTVGLFRLR 644 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/248 (70%), Positives = 206/248 (83%) Query: 75 IREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRQNADNAQEANTL 134 IR AS TI ATR+IASGN+DLS RTE QASSLE+TA+AME+L S+V+QNADNA +AN L Sbjct: 273 IRGASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQL 332 Query: 135 SQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNILALNAAVEAARA 194 + SAS++A RGG +V +VV+TM +INASS+KIVDII VIDGIAFQTNILALNAAVEAARA Sbjct: 333 AVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARA 392 Query: 195 GEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQAGSTIRSVVESV 254 GEQGRGFAVVA EVRSLAQRSA AAKEIK LI DSV V AG V +AG+T+R +V SV Sbjct: 393 GEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASV 452 Query: 255 RKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAGAQQLQEQAARLA 314 R+V+D+V EIT+AS+EQ GI++ + AV +D ATQQNAALVE+AAA AQ LQEQA L Sbjct: 453 RRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLT 512 Query: 315 EVVALFRL 322 +VVA FRL Sbjct: 513 QVVAQFRL 520 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 293 bits (749), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 177/326 (54%), Positives = 236/326 (72%), Gaps = 5/326 (1%) Query: 1 MAVLVTILAAL---VLGALISRVLRRLSVVQRALEEIAD-GDGDLTRRLDTHGSTDELGR 56 M VLV++L A+ ++ L ++ + R +E I GDL +R+D GS +E+G+ Sbjct: 193 MWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGS-NEMGQ 251 Query: 57 ISAAFNRFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQ 116 ++ ++ + D+R ++ I++ +IA GN DLS RTE QA+SLE+TAA+MEQ Sbjct: 252 LAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQ 311 Query: 117 LTSSVRQNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGI 176 LT++V+QNA+NA++A+ L+ SASE A +GG +V+ VVQTM I +SSQKI DIISVIDGI Sbjct: 312 LTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGI 371 Query: 177 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAG 236 AFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIK LI DSV +V G Sbjct: 372 AFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVG 431 Query: 237 EQTVSQAGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALV 296 V AG T+ +V +V +V+D++ EI SAS EQS+GI Q AVA MD+ TQQNA+LV Sbjct: 432 STLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLV 491 Query: 297 EEAAAGAQQLQEQAARLAEVVALFRL 322 EE+AA A L+EQA+RL + VA+FR+ Sbjct: 492 EESAAAAAALEEQASRLTQAVAVFRI 517