BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0124.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5118 [K] COG1595 DNA-directed RNA polymerase specialized sigm...    62   3e-10

>mll5118 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit,
           sigma24 homolog Mlo Mesorhizobium loti
          Length = 188

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 18  KQLSEAQLRRHIGGALDRLSFEHRTVMALTYFHGMSYDEIAHTMGCSINTVKTRMFYARQ 77
           K+   A LRR I    D L  EHRTV+ L Y+HG S  EI   +   + TVKTRMFYAR+
Sbjct: 117 KEDKAAALRRFI----DALPEEHRTVIDLAYYHGQSVTEIGEVLAIPVATVKTRMFYARK 172

Query: 78  KLKVFLSA 85
           KL   L A
Sbjct: 173 KLGESLKA 180