BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0116.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 340 2e-93 mlr5222 Non COG 313 2e-85 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 116 7e-26 AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ... 96 9e-20 AF0225 [E] COG4177 ABC-type branched-chain amino acid transport ... 84 5e-16 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 172/240 (71%), Positives = 203/240 (84%) Query: 18 SWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSS 77 S R A +++L +A++++P + Y+ +A+L+PFLALSLA VGLNLLTGYAGQ+SLGS+ Sbjct: 13 SLPRRAGTVVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSA 72 Query: 78 AFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQ 137 AFMAVGAFAAYN +LRV+GLPL VSI LAGL+A IG+VFGLPSLRLRGFYLAVSTLAAQ Sbjct: 73 AFMAVGAFAAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQ 132 Query: 138 FFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQ 197 FFVQW L KFSW SN++ SGVIDAP L + G++F+ P GRYLFAL VT LT L +RLV Sbjct: 133 FFVQWALTKFSWLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVS 192 Query: 198 SQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVEPAGTN 257 SQTG +FIAVRDNE AAR+IGVPVLRTKLLAFA+SSF+IGVAGV+W F YLRTVEPAG N Sbjct: 193 SQTGRNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFN 252 >mlr5222 Non COG Length = 346 Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/257 (69%), Positives = 210/257 (81%), Gaps = 8/257 (3%) Query: 1 MTTSLASSPRVLPLRGLSWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAV 60 +T++ +S+P VLP W AP +LLL A+ I+PL S Y+ +A+L+PFLAL LA V Sbjct: 4 ITSNFSSAP-VLP----KW--TAP-VLLLAFAYGIVPLIGSSYLFEAILLPFLALGLAGV 55 Query: 61 GLNLLTGYAGQLSLGSSAFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLP 120 GLN+LTGYAGQ+SLGS+AFMA GAFAAYN NLRVEGLPL+ SI LAG+ A AIG+VFGLP Sbjct: 56 GLNILTGYAGQVSLGSAAFMAAGAFAAYNFNLRVEGLPLIGSIVLAGIVAAAIGIVFGLP 115 Query: 121 SLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLF 180 SLRL+GFYLAVSTLAAQFFVQW L KFSWFSN++ SGVIDAP L +GGLA D GRYLF Sbjct: 116 SLRLKGFYLAVSTLAAQFFVQWALTKFSWFSNNSASGVIDAPRLSIGGLALDGAVGRYLF 175 Query: 181 ALAIVTVLTLLCWRLVQSQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAG 240 AL V +LT L RLV SQTG +FIA+RDNE AAR+IG+PVL+TKLLAFA+SSF+IGVAG Sbjct: 176 ALTTVALLTFLAHRLVTSQTGRNFIAIRDNETAARIIGIPVLKTKLLAFAISSFIIGVAG 235 Query: 241 VLWGFVYLRTVEPAGTN 257 V+W F YLRTVEPAG + Sbjct: 236 VIWAFAYLRTVEPAGFD 252 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 13/208 (6%) Query: 42 PYVIDA----LLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAAYNLNLRVEGL 97 P+VI LL+ + +AA+GLN+ G AGQ+SL +A M +GA+ N L + G+ Sbjct: 41 PFVIGKYYLNLLVVMMIFWIAAIGLNITLGLAGQISLAHAALMGIGAYTVANAALHL-GV 99 Query: 98 PLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSG 157 + + +AGLAA +G++ LPS RL+ +YLA+++LAAQ +++V +S +P Sbjct: 100 NSVAILPIAGLAAALLGIILSLPSFRLKEYYLAMASLAAQLILEYV------YSRIDPDQ 153 Query: 158 VIDAPPLVVG--GLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNELAAR 215 PP G++ P Y F LAI V+ L + +S G AVRDN++A+ Sbjct: 154 YTPVPPETKTLLGISLTEPTALYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVASE 213 Query: 216 VIGVPVLRTKLLAFAVSSFVIGVAGVLW 243 IG+ V K AFA+ F GVAG L+ Sbjct: 214 AIGINVQLVKATAFAIGGFYAGVAGGLY 241 >AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 323 Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 12/245 (4%) Query: 17 LSWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGS 76 ++W+ P +L+L V +LPL S Y + + F+ ++AA+GLN++ GY GQ SL Sbjct: 1 MNWKFVYPVILILAV---LLPLTGSSYALRISTL-FIIYTIAAMGLNIIIGYTGQASLAQ 56 Query: 77 SAFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAA 136 AF +GA+ + L L G S+ +A + + GL +LRL+G Y A++TL Sbjct: 57 GAFYGLGAYVSALLVL--NGWSFWASVIVAIAFVAFVAFLIGLMTLRLKGAYFAIATLLF 114 Query: 137 QFFVQWVLVKFSWFSNDNPSGV--IDAPPLVVGGLA--FDTPAGRYLFALAIVTVLTLLC 192 + V+ K+ + P G+ I +P + + G++ F Y LA++ V+TLL Sbjct: 115 NVIIYEVVDKWDEVTR-GPRGLFGIPSPSIELSGISISFSGTYNFYYLMLAVLIVMTLLY 173 Query: 193 WRLVQSQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVE 252 W +++S G +A+R+NEL A GV + + K+ +F +S+ VAG + Y+ ++ Sbjct: 174 WLIIRSSFGSIIVAIRENELLAEYAGVNLTKFKVASFVLSAIFAAVAGAFYS-AYIGSIF 232 Query: 253 PAGTN 257 P T+ Sbjct: 233 PDITS 237 >AF0225 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 338 Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 12/184 (6%) Query: 63 NLLTGYAGQLSLGSSAFMAVGAFAAYNLNLRVE-GLPLLVSIAL--AGLAATAIGLVFGL 119 +L+ GY GQ++LG + F+ +GA+ A L + GL L ++A+ G+ A +GL G+ Sbjct: 70 DLMVGYTGQVNLGHTTFVGLGAYVAAILQTPIRAGLSLHPALAIITGGVVAAGVGLSIGI 129 Query: 120 PSLRLRGFYLA-VSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRY 178 +LRLRG+Y + V+ + F+Q V + F + + + T +Y Sbjct: 130 ITLRLRGYYFSLVTAILPLVFMQTVFIWRELFGGEEGFAIENT--------MLTTTVEKY 181 Query: 179 LFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGV 238 F+LA++ V ++ ++V S+ G F+A+RD+E A +G+ + K+LAFA+SSF G+ Sbjct: 182 YFSLAVLVVSLVVMKKVVDSRIGLRFMALRDSEELAESLGINATKYKVLAFALSSFFAGI 241 Query: 239 AGVL 242 AG + Sbjct: 242 AGAM 245