BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0104.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 265 9e-71 AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 248 1e-65 PA4914 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 242 6e-64 RSp1593 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 241 1e-63 AGc4636 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 236 5e-62 >PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 265 bits (677), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 131/294 (44%), Positives = 192/294 (65%), Gaps = 3/294 (1%) Query: 1 MRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRL 60 MRR IPST+ L++F+++ARH SFTKAA EL +TQ A+ RQ+A LEE+L V+LF R R + Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 ILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAA 120 LTEAG Y+ +V+ L +E T VM + + LA++PTFG +WL+PRL +F Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQG-GGAIELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 YPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAEGLGS 180 +P+V +NL+ PF F + DAA++FG+ DW TV LM E VPVCS L G + Sbjct: 120 HPEVTINLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 VG--DLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMVIQAAVAGMGVALM 238 + +A + L+Q +TRP AW+ WF G++ + +SGPR+E +M+ QAA+ GMGVAL+ Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 239 PKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEAQ 292 P F+++ E++ G+L VP A S +YYL+ PE+ A + FR+W++ EA+ Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEAR 293 >AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 131/294 (44%), Positives = 180/294 (61%), Gaps = 6/294 (2%) Query: 2 RRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRLI 61 R+ +PSTS L AFD+ AR SF+ AA+EL +TQGA+SRQV LEE L V+LFER R + Sbjct: 6 RKLLPSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVS 65 Query: 62 LTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAAY 121 LT G YA ++ L +I A+ Q+MT + + LNLA+LPTFG +WL+PR+ F A + Sbjct: 66 LTTEGSAYAKSIAAALGEIRSASLQIMT-KTHGNTLNLAMLPTFGTRWLLPRIPDFVANH 124 Query: 122 PDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKAL--AEGLG 179 P++ +N +T + FDF Q+D AIH G+ DWP LM E V PVCS A + Sbjct: 125 PEITINFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVAPVCSPQFLSAHPVE 184 Query: 180 SVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNAL-SGPRFEQLAMVIQAAVAGMGVALM 238 D+A + LL +RP AW WF +G+ AL G RFEQ + V QA +AG+GVALM Sbjct: 185 KGEDIAALPLLHMASRPGAWGHWFESLGLSL--ALPQGMRFEQFSSVAQACIAGLGVALM 242 Query: 239 PKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEAQ 292 P F+++ E+ QL F +SP SYY V P A A ++ FR+W++ + + Sbjct: 243 PLFLIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVVLFRDWLVRQVE 296 >PA4914 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 312 Score = 242 bits (618), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 179/290 (61%), Gaps = 2/290 (0%) Query: 2 RRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRLI 61 +R +PS + L F+ ARH+SFT+AA EL +TQ A+S+QVA LEE L LF R+ +RL Sbjct: 4 KRRLPSMTALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQ 63 Query: 62 LTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAAY 121 LT AG Y A+V IL+Q+E++T +++Y VL +A PTFG +WLIP+L + + Sbjct: 64 LTPAGELYLAEVRRILQQVELSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRH 123 Query: 122 PDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKAL--AEGLG 179 P++ L+L E+ P D D A FG P +RL GE++V VC+ +L A GL Sbjct: 124 PNIHLDLRQELEPDDLRQGHCDLAFFFGPGTLPGAECIRLFGEQLVAVCAPSLLPAGGLD 183 Query: 180 SVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMVIQAAVAGMGVALMP 239 LA + LLQ+ +R +AW DWF + +C GPRF+ M I+AA AG GVAL+P Sbjct: 184 EPTQLAGLVLLQNASRAEAWHDWFASLERNCQGCYHGPRFDTFYMCIRAAQAGCGVALLP 243 Query: 240 KFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILS 289 +F+VE E++ G+L + +P A+ S ++YYL YPE A + F EW++ Sbjct: 244 RFLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFIEWMVE 293 >RSp1593 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 296 Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 181/296 (61%), Gaps = 4/296 (1%) Query: 1 MRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRL 60 MR+ IP+ L AF+ SAR SFT+AA+EL +TQ AV RQVA LE L V LF R+ RRL Sbjct: 1 MRKDIPNLGALQAFEASARLGSFTRAADELALTQSAVGRQVAALERRLGVPLFTRVRRRL 60 Query: 61 ILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAA 120 +LT+AGR+YAA++ L+QI+ T + + +L +A++PTF WLIPRLA+FA Sbjct: 61 VLTDAGREYAARIRRHLEQIQRDTQALSAGRQMGYILEIAVVPTFATHWLIPRLAEFARL 120 Query: 121 YPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGE-EVVPVCSKALAEG-- 177 +PD+ +NL++ L F F DAAI+FG+ WPDT L E +VPVCS A E Sbjct: 121 HPDITVNLASRTLAFSFQECAYDAAIYFGDQFWPDTKGAFLFPEGPMVPVCSPAYLEAHD 180 Query: 178 LGSVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCP-NALSGPRFEQLAMVIQAAVAGMGVA 236 + S A+ L +TR AW++W+ G D A GPR+E MV+ AAVAG+G+ Sbjct: 181 VSSEAGFAQCRHLHLSTRANAWREWYTAQGWDYTVGASRGPRYELHTMVVAAAVAGLGMG 240 Query: 237 LMPKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEAQ 292 L+P+ ++ TE+ GQL +P ++ Q YY YPE+ A+ F W+LS A+ Sbjct: 241 LVPRLLIGTELETGQLVIPVERSLAVTQGYYFAYPERVRPSDALGAFERWMLSVAR 296 >AGc4636 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 308 Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 131/295 (44%), Positives = 173/295 (58%), Gaps = 4/295 (1%) Query: 2 RRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRLI 61 RRF+PS S L AF+ ++R S T AA EL +TQGAVSRQ+ LEE L V LF R + + Sbjct: 6 RRFLPSLSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIR 65 Query: 62 LTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAAY 121 LT AG YA ++ L++I A+ + N LNL +LP+FG +WL+PRL F A + Sbjct: 66 LTRAGEGYAREIREALRRISTASLNLRA-NPDGGTLNLGVLPSFGTRWLVPRLPDFIARH 124 Query: 122 PDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAE--GLG 179 P + +NL T FDF T VDAAIHFG P WP T + LM E+V+PVCS A E GL Sbjct: 125 PGISVNLLTRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELYGLS 184 Query: 180 SVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMVIQAAVAGMGVALMP 239 DL V LL TTRP AW+ WFR V N + G F+Q + +A+ AG+G +L+P Sbjct: 185 RPDDLLHVPLLHMTTRPDAWEQWFRSHDVRFDN-VHGMLFDQFTTIAEASSAGVGASLVP 243 Query: 240 KFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEAQGG 294 FM+E E+ G+L V+S ++YYL A + FR WI+ +A G Sbjct: 244 SFMIEEELRSGRLVSAVAGEVESEEAYYLACMPDRATYPPLESFRRWIVYQAAIG 298