BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0101.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0123 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 199 5e-51 mlr5541 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 145 8e-35 VC1955 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 145 9e-35 PA2123 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 143 4e-34 RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 142 9e-34 >PA0123 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 170/296 (57%), Gaps = 4/296 (1%) Query: 1 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 60 MD L M IF+ VV+ G+ + AA+ LG+T S+VSQ I LE+ TLLHRTTR+L+LTE Sbjct: 1 MDSLKGMAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTE 60 Query: 61 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 120 AG+ FY CA+++A+A EA VGELR+A+ + + AL + +H Q Sbjct: 61 AGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQ 120 Query: 121 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIP--LARMGAVLCASPDYLQARAAIRR 178 LR+ + D +DL+ +DLA+RVG + L +VLCA+P YL+ RA I R Sbjct: 121 LRLQLFFQDERIDLVAERIDLAIRVGNLADSSLVARHLGDWSSVLCAAPAYLRQRAPINR 180 Query: 179 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 238 PE L ++ + + + + + LTL+ G+ +LRL PRV AN ++RQ + G GV Sbjct: 181 PEQL--TEVDWISLNTSNHLNHLTLSGPGGEVCKLRLEPRVAANGMLAVRQFTLDGLGVS 238 Query: 239 RFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYFA 294 +V+D L GRL ++LP+W + G + T R+A PAK+ I ++ FA Sbjct: 239 YQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVKVAIEALRRAFA 294 >mlr5541 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 314 Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 140/265 (52%), Gaps = 6/265 (2%) Query: 1 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 60 MD M +F V+ G+ S AA ++GL+ + V QH++ALE LGT LL+RTTR+ SLT+ Sbjct: 1 MDLFRSMQVFVATVQAGSMSSAAAQVGLSPAMVGQHVAALEERLGTRLLNRTTRRQSLTD 60 Query: 61 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 120 G + C I+ A E+L G+LR+ + + E LVPAL + P+ Sbjct: 61 FGASYIEQCRDILDRVAIADREAEALQTGARGQLRVTAPTTFGAEVLVPALRRYRELAPE 120 Query: 121 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDI--PLARMGAVLCASPDYLQARAAIRR 178 + + I ++D NVDL++ D+A R+G P I LA ++CA+PDYL + Sbjct: 121 VTLDITLTDRNVDLVEEGFDIAFRIGTLPDNHLIARSLAPYRMMICAAPDYLVRKGMPEH 180 Query: 179 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 238 P +L H+++ FTP A ++ G ++ VT N +++R A G GV Sbjct: 181 PSELSSHEVVGFTP----AARSPWRMSKGGDVVEVEPAWTVTVNSGQAVRTAARAGLGVV 236 Query: 239 RFLRSKVQDDLKSGRLVEVLPDWSL 263 + D+++G+LV++ PDW L Sbjct: 237 MQPAILLSPDVQAGQLVQLFPDWHL 261 >VC1955 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 315 Score = 145 bits (367), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 150/288 (52%), Gaps = 5/288 (1%) Query: 6 RMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTEAGQGF 65 +M +F+ +++ +F+ AA LG++ S VS+ ++ALEA LG L+ RTTR +LT+AG F Sbjct: 8 QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67 Query: 66 YAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQLRISI 125 YA C ++ + A+ E E+VG +R+ S +++PAL+ + +P+L + + Sbjct: 68 YAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127 Query: 126 HVSDHNVDLMDHSVDLALRVGKTPGPGDIP--LARMGAVLCASPDYLQARAAIRRPEDLL 183 H+ DH VD++ +DL + + G + +A V+ ASPDYL + P L+ Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRIADCRFVVAASPDYLLRYGSPTEPMALM 187 Query: 184 QHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVGRFLRS 243 +H L + D +R G +++ + + A ++R AV G G+ Sbjct: 188 EHNCLIYRSWERDYT--RWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLATY 245 Query: 244 KVQDDLKSGRLVEVLPDWSLEGYCAFITTR-HRDAVPAKILACIAQIQ 290 ++D+ ++G+L+++LP+WS F R +P K A I I+ Sbjct: 246 LLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIK 293 >PA2123 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 310 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 6/285 (2%) Query: 1 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 60 M+ M F VV+ +FS+AAR LG T S VSQ I LE LG LL+RT R LSLT+ Sbjct: 1 MNKFAEMTTFVSVVDAHSFSEAARRLGTTKSQVSQRIQQLERRLGRVLLNRT-RPLSLTD 59 Query: 61 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 120 G+ +Y H R++ +A + +L G+LR+++ P YL P L F HPQ Sbjct: 60 PGRTYYEHACRLLQELEQAEASVLDADDDLRGQLRLSAPLAFTPRYLAPLLARFAERHPQ 119 Query: 121 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDI--PLARMGAVLCASPDYLQARAAIRR 178 LR+ + D V+L + D+ALR+G+ + P+ +LCASPDYL + Sbjct: 120 LRVDVQADDRFVNLQEPRFDMALRMGRLDDSCLVARPITANRHLLCASPDYLARHGVPQH 179 Query: 179 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 238 PE+L H L + P ++ L + G+ A R+ R+ + + + A G G+ Sbjct: 180 PEELQAHDGLVYYNREPGGMLCLPVD---GEPASFRIRVRMRTDSGHQLLEGARAGLGLA 236 Query: 239 RFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKIL 283 D L +G L+ VLP +S +G + R P KIL Sbjct: 237 ILPSFLAADALLAGELLPVLPGYSPDGGQVSVVYRKTQRTPRKIL 281 >RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 309 Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 5/264 (1%) Query: 1 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 60 MD + F VVE G F+ AAR LGL SS+++ ++ALEA LGT L++R+TR ++LTE Sbjct: 1 MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTE 60 Query: 61 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 120 AG +Y RI+ + A L G LR+ ++ PA+ F+R P Sbjct: 61 AGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPG 120 Query: 121 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDI--PLARMGAVLCASPDYLQARAAIRR 178 +R+ I ++D V+L++ +D+A+R+G P + LA V+CASPDYL + Sbjct: 121 MRLDIRLTDAMVNLVEDRIDVAIRLGALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQ 180 Query: 179 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 238 P DL H L F D+ LT R G+ ++ + + AN + +R+ A+ G G+ Sbjct: 181 PRDLAHHNCLLFDYLTGDSTWTLT---RDGKREKVPVSGNLRANGSELLREAAMGGAGML 237 Query: 239 RFLRSKVQDDLKSGRLVEVLPDWS 262 V DD+ +GRLV VL W+ Sbjct: 238 LMPTWLVGDDIAAGRLVPVLEPWT 261