BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0080.p (412 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1187 [K] COG1158 Transcription termination factor Rso Ralston... 748 0.0 NMA0825 [K] COG1158 Transcription termination factor NmA Neisser... 644 0.0 NMB0617 [K] COG1158 Transcription termination factor Nme Neisser... 643 0.0 VC0307 [K] COG1158 Transcription termination factor Vch Vibrio c... 620 e-177 BU596 [K] COG1158 Transcription termination factor Buc Buchnera ... 618 e-177 >RSc1187 [K] COG1158 Transcription termination factor Rso Ralstonia solanacearum Length = 420 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/412 (86%), Positives = 389/412 (94%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVS LLEMA L+I+NA R+RKQELMFAILKK+AK GE IFGDG LEVLPDGFGFLRSP Sbjct: 9 LHVSQLLEMAGQLEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 + SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVN +PPEA K Sbjct: 69 ETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNAQPPEAVK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 +RI+FENLTPLHPN+ L LERD++ EENITGRIID+IAP+GRGQR LLVASPKSGK+VML Sbjct: 129 NRIMFENLTPLHPNRTLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAIT NHP+ + VLLIDERPEEVTEMQR+VRGEVVASTFDEPA RHVQVAEMV+E Sbjct: 189 QHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPAVRHVQVAEMVIE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVE+KKDVVI+LDSITRLARAYNTV+P SGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQRPKRFFGAARNLE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL+KSGTRRE Sbjct: 309 EGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 412 ELLIKPD LQK+W+LRK ++DMDE+EAMEF+LDK+KSTKNNAEFFDMMRRG+ Sbjct: 369 ELLIKPDILQKVWILRKFIHDMDEVEAMEFLLDKLKSTKNNAEFFDMMRRGS 420 >NMA0825 [K] COG1158 Transcription termination factor NmA Neisseria meningitidis Z2491 Length = 419 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/409 (73%), Positives = 361/409 (88%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +H+S LLE+A IENA R RKQ+L+FAI+++ K GE G LE+LPDGFGFLRS Sbjct: 9 LHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSA 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 D SY+A DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +NG+ PE + Sbjct: 69 DTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCR 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+G+GQR LLVA PKSGK+VML Sbjct: 129 HKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 Q+IAHA+T+N+P+ +IVLLIDERPEEVTEM RSVRGEVV+STFDEPA RHVQVAEMVLE Sbjct: 189 QNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKR+VE KKDVVILLDSITRLARAYNTV+P SGK+LTGGVDANAL RPKRFFGAARNVE Sbjct: 249 KAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN++KSGTRRE Sbjct: 309 EGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEKRLFPAININKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 409 ELL+ DQLQ++W+LRK ++ MDEIEA EF++ K+K++KNN +FF++MR Sbjct: 369 ELLVPNDQLQRMWLLRKFLHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417 >NMB0617 [K] COG1158 Transcription termination factor Nme Neisseria meningitidis MC58 Length = 419 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/409 (73%), Positives = 360/409 (88%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +H+S LLE+A IENA R RKQ+L+FAI+++ K GE G LE+LPDGFGFLRS Sbjct: 9 LHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSA 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 D SY+A DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +NG+ PE + Sbjct: 69 DTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCR 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+G+GQR LLVA PKSGK+VML Sbjct: 129 HKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 Q+IAHA+T N+P+ +IVLLIDERPEEVTEM RSVRGEVV+STFDEPA RHVQVAEMVLE Sbjct: 189 QNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKR+VE KKDVVILLDSITRLARAYNTV+P SGK+LTGGVDANAL RPKRFFGAARNVE Sbjct: 249 KAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN++KSGTRRE Sbjct: 309 EGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEKRLFPAININKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 409 ELL+ DQLQ++W+LRK ++ MDEIEA EF++ K+K++KNN +FF++MR Sbjct: 369 ELLVPNDQLQRMWLLRKFLHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417 >VC0307 [K] COG1158 Transcription termination factor Vch Vibrio cholerae Length = 419 Score = 620 bits (1600), Expect = e-177, Method: Compositional matrix adjust. Identities = 293/408 (71%), Positives = 359/408 (87%) Query: 3 VSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDA 62 VS L+++ SL +EN ARLRKQ+++FAILK AKSGE IFGDG LE+L DGFGFLRS D+ Sbjct: 11 VSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADS 70 Query: 63 SYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKHR 122 SY+A DDIY+SPSQIRRFNL TGDSI G++R PK+GERYFAL+KV+ VN + P+ ++++ Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNK 130 Query: 123 ILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVMLQH 182 ILFENLTPLH N+ + +ER E+IT R++DL AP+G+GQRGL+VA PK+GK+++LQ+ Sbjct: 131 ILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQN 190 Query: 183 IAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLEKA 242 IA +I +NHP+ V++VLLIDERPEEVTEMQR V+GEVVASTFDEPA+RHVQVAEMV+EKA Sbjct: 191 IAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 250 Query: 243 KRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVEEG 302 KRLVE KKDVVILLDSITRLARAYNTV+PASGKVLTGGVDANAL RPKRFFGAARNVEEG Sbjct: 251 KRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG 310 Query: 303 GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREEL 362 GSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL R++AEKRV+PAI+ ++SGTRREEL Sbjct: 311 GSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREEL 370 Query: 363 LIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 410 L K D+LQK+W+LRK+++ M E +AMEF++DK+ TK N EFFD MRR Sbjct: 371 LTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418 >BU596 [K] COG1158 Transcription termination factor Buc Buchnera sp. APS Length = 419 Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust. Identities = 290/410 (70%), Positives = 359/410 (87%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 M VS L+ + + +EN AR+RKQ+++FAILK+ AKSGE IFGDG LE+L DGFGFLRS Sbjct: 9 MPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 D+SY+A DDIY+SPSQIRRFNL TGD+I G++R PK+GERYFAL+KV++VN + PE ++ Sbjct: 69 DSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPENAR 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 +ILFENLTPLH N L++ER E++T R++DL +P+GRGQRGL+VA PK+GK+++L Sbjct: 129 SKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTILL 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 Q+IA +I NHPD V++VLLIDERPEEVTEMQR V+GEVVASTFDEPA+RHVQVAEMV+E Sbjct: 189 QNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVE KKDV+ILLDSITRLARAYNTV+PASGKVLTGGVDANAL RPKRFFGAARNVE Sbjct: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+ L R++AEKRV+PAI+ ++SGTR+E Sbjct: 309 EGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDYNRSGTRKE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 410 ELL PD+LQK+W+LRK+++ M EI+AMEF+L+K+ TK N EFFDMM+R Sbjct: 369 ELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKR 418