BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0067.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia... 423 e-118 STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonell... 316 3e-86 xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia ... 312 6e-85 ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia... 310 3e-84 ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherich... 310 3e-84 >RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia solanacearum Length = 308 Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/298 (70%), Positives = 243/298 (81%), Gaps = 2/298 (0%) Query: 11 PSVSREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYF 70 P S EAI FCD+LWLEDGL++NTLDAYRRD+TLYA WL R KAL +T+ DL+ YF Sbjct: 12 PPSSTEAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWL-AGRGKALDQTEDVDLSDYF 70 Query: 71 AARHDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEA 130 AARH+++ S++NRR V KRFFQ ALR+H V+ADP L +A+QP R+PKT+SE QVEA Sbjct: 71 AARHEDSLASTANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEA 130 Query: 131 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTG-KGSKTRLV 189 L+AAPDV PLGLRDRAMIELMYASGLRVSE+V LK++EVG+NEGV+RV G KG K RLV Sbjct: 131 LIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLV 190 Query: 190 PFGEEAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGITVR 249 PFG EAG W+ RYL + R+ +L + DALFVTARG MTRQ FW LIK+YA +A I Sbjct: 191 PFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAP 250 Query: 250 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 LSPHTLRHAFATHLLNHGADLRVVQ+LLGHADISTTQIYTHVARERL+ LHA HHPRG Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPRG 308 >STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonella typhimurium LT2 Length = 298 Score = 316 bits (810), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 163/292 (55%), Positives = 205/292 (70%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAARHDE- 76 I++F D+LWLE L++NTL AYRRD+++ WL+ R K L QA+DL A R + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHH-RGKTLATAQADDLQTLLAERVEGG 66 Query: 77 TKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLAAPD 136 K +SS R L+ ++RFFQ R+ + DP +L S + PQRLPK +SE QVE LL AP Sbjct: 67 YKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 AWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ FW IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia coli K12 Length = 298 Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 161/292 (55%), Positives = 203/292 (69%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAARHDE- 76 I++F D+LWLE L++NTL+AYRRD+++ WL+ R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLAAPD 136 K +SS R L+ ++R FQ R+ DP L S + PQRLPK +SE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 AWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ FW IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia coli O157:H7 EDL933 Length = 298 Score = 310 bits (794), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/292 (54%), Positives = 202/292 (69%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAARHDE- 76 I++F D+LWLE L++NTL+AYRRD+++ WL+ R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLAAPD 136 K +SS R L+ ++R FQ R+ DP L S + PQRLPK +SE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 AWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ W IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherichia coli O157:H7 Length = 298 Score = 310 bits (794), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/292 (54%), Positives = 202/292 (69%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAARHDE- 76 I++F D+LWLE L++NTL+AYRRD+++ WL+ R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLAAPD 136 K +SS R L+ ++R FQ R+ DP L S + PQRLPK +SE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 AWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ W IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298