BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0061.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 327 2e-89 PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 327 3e-89 PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 311 2e-84 PA4616 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 273 4e-73 BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 263 3e-70 >PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pmu Pasteurella multocida Length = 372 Score = 327 bits (839), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 161/325 (49%), Positives = 219/325 (67%), Gaps = 1/325 (0%) Query: 3 LKSIVFALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGR 62 LKS + +A +++A SA+A +PI+IKFSHVVAN+TPKG+ A F++L E+ G+ Sbjct: 42 LKSTLKKAVSAMIISAAFSFSAWANEPIVIKFSHVVANETPKGQGALMFQKLVEERLAGK 101 Query: 63 VKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLY 122 VKVEVYPNS+LY D +E+EAL L VQMLAPSLAKF K+ ++FDLP++F + + Sbjct: 102 VKVEVYPNSSLYGDGKEMEALLLNNVQMLAPSLAKFDKY-TKKIQIFDLPFLFDDIEAVQ 160 Query: 123 RVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDA 182 R + GK L K +E KGITGL YW+N K +SANK L +P D RGLK R+Q+S+VLDA Sbjct: 161 RFEQSEAGKSLLKSMEEKGITGLGYWNNDLKQLSANKELREPKDARGLKFRVQNSEVLDA 220 Query: 183 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAV 242 Q +AL A P+ +AF E+YQ LQTGVV+G ENP SN+Y+QK+HEVQK +T SNHG L Y V Sbjct: 221 QFKALKAVPRKMAFGEMYQGLQTGVVNGAENPYSNIYSQKIHEVQKFITESNHGLLSYMV 280 Query: 243 IVNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 302 IVN FW+ +P D+R +L + + + N + N A + + +T+ LT ++ Sbjct: 281 IVNTNFWNSIPEDIRAELSKILDEVSVEVNKKSHDLNLADKQKIIDSKASTIITLTPEQR 340 Query: 303 AEWRKALLPVQQQMASRIGKDLIDA 327 +WR A+ PV +Q IG DLI A Sbjct: 341 EKWRDAVRPVWKQFEGEIGADLIQA 365 >PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 327 bits (837), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/324 (51%), Positives = 222/324 (68%), Gaps = 7/324 (2%) Query: 4 KSIVFALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRV 63 K++V AL+ AG+V +A PI+IKFSHVVA TPKG+ A FK+L E+ G+V Sbjct: 7 KALVCALSLTV---AGIVQAA---DPIVIKFSHVVAEHTPKGQGALLFKKLVEERLPGKV 60 Query: 64 KVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLYR 123 KVEVYPNS+L+ D +E+EAL LG VQ++APSLAKF K+ ++FDLP++F + + R Sbjct: 61 KVEVYPNSSLFGDGKEMEALLLGDVQIIAPSLAKFEQY-TKKLQIFDLPFLFDNIQAVDR 119 Query: 124 VTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDAQ 183 + P GK+L ++ KGITGL YW NG K +SANKPL +P D RGLK R+Q+SKVL+ Q Sbjct: 120 FQQSPQGKELLTSMQDKGITGLGYWHNGMKQLSANKPLREPKDARGLKFRVQASKVLEEQ 179 Query: 184 MRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVI 243 +A+ ANP+ ++F+EVYQ LQTGVV+GTENP SN+Y+QKMHEVQK++T S+HG L Y VI Sbjct: 180 FKAVRANPRKMSFAEVYQGLQTGVVNGTENPWSNIYSQKMHEVQKYITESDHGVLDYMVI 239 Query: 244 VNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKA 303 N KFW+GLP DVR L M + T N A+ N + + + + LT ++A Sbjct: 240 TNTKFWNGLPEDVRGVLAKTMDEVTVEVNKQAEALNQGDKQRIVEAKTSEIIELTPEQRA 299 Query: 304 EWRKALLPVQQQMASRIGKDLIDA 327 EWRKA+ PV ++ IG DLI A Sbjct: 300 EWRKAMQPVWKKFEGEIGADLIKA 323 >PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 311 bits (796), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/325 (47%), Positives = 219/325 (67%), Gaps = 3/325 (0%) Query: 3 LKSIVFALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGR 62 K++V AL A + +A+A QPI+IKFSHVVA +TPKG+ A FK+L E+ GR Sbjct: 2 FKTMVRALLCALAIGGSCLANA--AQPIVIKFSHVVAENTPKGQGALLFKKLVEQRLGGR 59 Query: 63 VKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLY 122 V+V+VYPNS+L+ D +E+EAL LG VQMLAPSLAKF ++ ++FDLP++F + Sbjct: 60 VEVDVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQY-TRKVQIFDLPFLFDDIQAVD 118 Query: 123 RVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDA 182 R P G+ L ++ KGI GLAYW NG K +SAN+PL +P D RGLK R+Q+S VL+ Sbjct: 119 RFQRSPQGRALLTSMQGKGILGLAYWHNGMKQLSANRPLLEPEDARGLKFRVQASDVLNE 178 Query: 183 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAV 242 Q R L A + ++F+EVYQ LQTGVV+GTEN SN +QK++EVQK+ T SNHG + Y V Sbjct: 179 QFRQLRAISRKMSFAEVYQGLQTGVVNGTENTWSNYESQKVNEVQKYFTESNHGLVDYMV 238 Query: 243 IVNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 302 I N KFW+GLP+D+R +L+ M + T N A++ N A + +G + ++ L+ ++ Sbjct: 239 ITNAKFWNGLPADIREELQRIMDEVTVQVNLEAERLNRDARQRILASGASEIHTLSPQQR 298 Query: 303 AEWRKALLPVQQQMASRIGKDLIDA 327 A+WR+A+ PV Q+ +G DL+ A Sbjct: 299 ADWRQAMQPVWQKFRGNVGADLLQA 323 >PA4616 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 332 Score = 273 bits (698), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 148/323 (45%), Positives = 206/323 (63%), Gaps = 11/323 (3%) Query: 9 ALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVY 68 ALAA V+A VA A P++IKFSHVV++DTPKGK A FK+LAE+ G+VKVEVY Sbjct: 9 ALAALFAVSA--VAHAEDAGPVVIKFSHVVSDDTPKGKGALLFKKLAEERLPGKVKVEVY 66 Query: 69 PNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLYRVTEGP 128 PNSTL+ D +E+EAL+ VQMLA SL+KF P K+ +VFDLP++F + L R + Sbjct: 67 PNSTLFGDADEIEALRANKVQMLATSLSKFEPY-TKQLQVFDLPFLFDDLEALKRFQKRD 125 Query: 129 IGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDAQMRALG 188 ++L + + GI GLAYW+NG K +SA + LH+P D +GL RIQ S VL+AQ LG Sbjct: 126 KSRELLRSMAKHGIYGLAYWNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAMLG 185 Query: 189 ANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKF 248 A + L+++E +A+Q G V GTEN SNL QK+ VQ ++T +NHG L Y +I + F Sbjct: 186 ATAKQLSYAETLKAMQAGSVQGTENTWSNLAGQKIDSVQPYITETNHGALSYMLITSSAF 245 Query: 249 WDGLPSDVRTQLEGAMKDAT----KYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE 304 W G+P RT+LE + + T K A A+ Q+E + LAA GK+ + L+ E Sbjct: 246 WTGIPYQTRTELESIVDEVTLVVNKEAEALNQKEREHLLAA----GKSRLVSLSAEEHEA 301 Query: 305 WRKALLPVQQQMASRIGKDLIDA 327 WR A+ P+ + ++IG D++ A Sbjct: 302 WRNAMKPLWKNYEAQIGSDVLRA 324 >BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Bsu Bacillus subtilis Length = 350 Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 2/300 (0%) Query: 27 QQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEALQLG 86 Q I+ KFSHVVA +TPKG AA +F +L + + G++K+EV+PN +LY D EE+EALQ G Sbjct: 42 QDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNG 101 Query: 87 AVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLYRVTEGPIGKDLFKKLEPKGITGLA 146 VQ +APS +K G L E+ V DLPY F + + + G IG LF L+ + GLA Sbjct: 102 DVQFIAPSTSKLGMLS-PEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA 160 Query: 147 YWDNGFKVMSANK-PLHQPSDFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQT 205 YW NGFK ++ N+ P+ P D +G +RI S V++ Q + LGA P +F+ +Q L+ Sbjct: 161 YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLEN 220 Query: 206 GVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDVRTQLEGAMK 265 VVDG EN SN+Y++K + VQ ++T+S+HGYLGYAV+ ++ FW + R L AMK Sbjct: 221 NVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMK 280 Query: 266 DATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLI 325 + T++ A+Q N L ++K +Y L+D EK EW K L PV +Q G++LI Sbjct: 281 ETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELI 340