BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0059.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 159 5e-39 CC0758 Non COG 144 1e-34 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 137 2e-32 SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 134 2e-31 mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti 132 5e-31 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 10/197 (5%) Query: 2 LHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPGT 61 + +VDD+E +RDSLTWL Y S L G+ CL+LDVRM G Sbjct: 15 VFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVG----CLILDVRMQGM 70 Query: 62 SGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SG L + L + +R P++F+TGHGDVPMAV +K GA DF EKPF++++L + V Sbjct: 71 SGPELQDRLLAEN--NRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVERM 128 Query: 122 LESSR----AGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 L +R A + A L+ L+ RE++VL+ I+AG++NK IAD+LGIS++TVE HRA Sbjct: 129 LSKARTEDSAAREQKAANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRA 188 Query: 178 HIFDKMNVKTAVELARL 194 +I +K+NV T +L RL Sbjct: 189 NIMEKLNVNTVADLLRL 205 >CC0758 Non COG Length = 202 Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 118/200 (59%), Gaps = 16/200 (8%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 ++H+VDD+E R+SL +L S + + Y S A L AL A ++ DVRMP Sbjct: 6 VVHVVDDDESARESLAFLLESADFEVVAYASAPAFLDALPQA-----RPGVVITDVRMPE 60 Query: 61 TSG---VALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDR 117 SG VA + LK K P++ +TGHGD+PMAV+ +++G DF EKPF++++++D Sbjct: 61 MSGQDLVARLSALKVK-----MPIVMITGHGDIPMAVEAMRSGVIDFLEKPFSESRMLDA 115 Query: 118 VLEALESSRAGGAED---AVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEV 174 + A + A D + R+ +LS RER+VLD ++AG NKVIA +LGIS RTVE+ Sbjct: 116 LKRAFATVEAAPVSDDQAVILKRIESLSERERQVLDGVVAGHANKVIARDLGISPRTVEI 175 Query: 175 HRAHIFDKMNVKTAVELARL 194 +RA + KM L R+ Sbjct: 176 YRAKLMTKMQADNLAALVRM 195 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 11/197 (5%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 ++ IVDD+ +R++LT L RS A ++S AA L + ++ G CLLLDVR+PG Sbjct: 15 VVFIVDDDVSMREALTDLFRSMKFDAEAFDSAAAFL----EKANLNRHG-CLLLDVRLPG 69 Query: 61 TSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 SG+ +L+ G +R P+IF+TG GD+PM+V +K GA DF KPF + ++D V Sbjct: 70 ISGLDFQVQLERVG--NRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAA 127 Query: 121 ALESS----RAGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 A+E R +AV S L+ REREV+ ++ G MNK IA ELGIS TV++HR Sbjct: 128 AMERDASRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHR 187 Query: 177 AHIFDKMNVKTAVELAR 193 ++ KM ++ +L R Sbjct: 188 GNVMRKMEARSVADLVR 204 >SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 204 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 112/197 (56%), Gaps = 11/197 (5%) Query: 2 LHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPGT 61 +HIVDDEE +R SL ++ A ++S A L A D L+ D+RMP Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFL-----AFAPDVRNGVLVTDLRMPDM 60 Query: 62 SGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SGV L L L P I +TGHGDVPMAV+ +K GA DF EKPF D +++ + A Sbjct: 61 SGVELLRNLG--DLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA 118 Query: 122 LESSRAGGAE----DAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 E A A+ + +++RL LS RER+VL ++AG NK IA +L IS RTVEVHRA Sbjct: 119 SEHLVAAEADVDDANDIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRA 178 Query: 178 HIFDKMNVKTAVELARL 194 ++ KM K+ L R+ Sbjct: 179 NVMAKMKAKSLPHLVRM 195 >mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 212 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 11/195 (5%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 M +VDD+ +RD+L L S I +I + S VL A + C +LDVRMPG Sbjct: 13 MAILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDA-----ELPDRPACFVLDVRMPG 67 Query: 61 TSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 SG+ L + L TKG+ + PV+FLTGHGD+ M+V +K GA DF KP D +D V Sbjct: 68 QSGLDLQHLLLTKGI--QTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSV 125 Query: 121 ALESSRAGGAEDAVQSRLAA----LSAREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 A+ + +A A + A L+ REREVL ++AG MNK IA +LGIS TV++HR Sbjct: 126 AVATDKARRAASTAARKTMALYETLTPREREVLRFVVAGAMNKQIAFDLGISEITVKLHR 185 Query: 177 AHIFDKMNVKTAVEL 191 +++ KMN ++ L Sbjct: 186 SNMMKKMNARSLTHL 200