BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0048.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2563 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase...   263   1e-70
PA4946 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase)...   199   2e-51
XF0760 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase)...   184   7e-47
NMB1442 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase...   175   3e-44
NMA1655 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase...   174   7e-44

>RSc2563 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Rso
           Ralstonia solanacearum
          Length = 636

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/166 (76%), Positives = 143/166 (86%)

Query: 1   MHAAHERILYEQLKTALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVM 60
           MHAAHERILYEQLKTAL+   + VQPLLIPVTF A PVE+GT EE  +TL  LGFDI+ +
Sbjct: 471 MHAAHERILYEQLKTALEARRIEVQPLLIPVTFAASPVEIGTAEEFGDTLDLLGFDISAV 530

Query: 61  SPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANR 120
           SPTTLAVRAVP LL+ ADAQ LARDVLRD++ YGGSRVL ER+NELL TLACH+AVRANR
Sbjct: 531 SPTTLAVRAVPTLLQKADAQALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANR 590

Query: 121 SLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 166
            L L EMNALLRQMEATER+DQCNHGRPTW Q+ ++DLD+LFLRGQ
Sbjct: 591 RLNLDEMNALLRQMEATERADQCNHGRPTWIQLTVADLDRLFLRGQ 636


>PA4946 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Pae
           Pseudomonas aeruginosa
          Length = 633

 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 117/166 (70%)

Query: 1   MHAAHERILYEQLKTALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVM 60
           MHAAHERI YE+LK A+    +  QPLL+P +      E    EEH      LGF++  +
Sbjct: 468 MHAAHERITYERLKVAMASEGLRGQPLLVPESIAVSEREADCAEEHSSWFQRLGFELQRL 527

Query: 61  SPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANR 120
            P +LA+R +PALLK A+A  L RDV+ D+ EYG S  +    NELLGT+ACH AVRANR
Sbjct: 528 GPESLAIRQIPALLKQAEATQLVRDVIADLLEYGTSDRIQAHLNELLGTMACHGAVRANR 587

Query: 121 SLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 166
            LTLPEMNALLR ME TERS QCNHGRPTWTQ+GL +LDKLFLRG+
Sbjct: 588 RLTLPEMNALLRDMEITERSGQCNHGRPTWTQLGLDELDKLFLRGR 633


>XF0760 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Xfa
           Xylella fastidiosa 9a5c
          Length = 619

 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 117/166 (70%)

Query: 1   MHAAHERILYEQLKTALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVM 60
           MHAAHERI YE+LK A DG  +  QPLL+P+T      E    E   ETL++LGF++   
Sbjct: 454 MHAAHERIGYERLKRAHDGIGLRTQPLLVPMTLMVAEREADVAECEAETLASLGFEVTRS 513

Query: 61  SPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANR 120
            P +L VR++PALL  A+ + L RDVL D+ E+G +R + E R+ LL T+ACH AVRA R
Sbjct: 514 GPGSLQVRSIPALLAQAEPEILLRDVLSDLSEHGHTRRVAEARDTLLATMACHGAVRAQR 573

Query: 121 SLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 166
            L++ EMNALLR MEATERS QCNHGRPTW +  L+++D+ FLRG+
Sbjct: 574 RLSISEMNALLRDMEATERSGQCNHGRPTWARFSLAEIDRWFLRGR 619


>NMB1442 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) Nme
           Neisseria meningitidis MC58
          Length = 658

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 1/167 (0%)

Query: 1   MHAAHERILYEQLKTALDGN-EMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAV 59
           MHAA ER+ YE++K     N  +  Q LLIPVTF A   E   + ++ ETL+  G +++ 
Sbjct: 492 MHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADYAETLAGFGLELSD 551

Query: 60  MSPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRAN 119
           M   TLAVRAVPA+L  AD  +LA+DVL ++ + G S+ + E  N +L T++CH ++RA 
Sbjct: 552 MGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENRILATMSCHGSIRAG 611

Query: 120 RSLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 166
           R LTLPEMNALLR ME T RS+QCNHGRPTW ++ L +LD LFLRGQ
Sbjct: 612 RRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ 658


>NMA1655 [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) NmA
           Neisseria meningitidis Z2491
          Length = 658

 Score =  174 bits (441), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 1/167 (0%)

Query: 1   MHAAHERILYEQLKTALDGN-EMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAV 59
           MHAA ER+ YE++K     N  +  Q LLIP+TF A   E   + ++ ETL+  G +++ 
Sbjct: 492 MHAAAERVNYEKMKRQRQENGRLQSQRLLIPITFAASHEECAALADYAETLAGFGLELSD 551

Query: 60  MSPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRAN 119
           M   TLAVRAVP +L  AD  +LARDVL ++ + G S+ + E  N +L T++CH +VRA 
Sbjct: 552 MGGNTLAVRAVPTMLGKADVVSLARDVLGELAQVGSSQTIEEHENHILATMSCHGSVRAG 611

Query: 120 RSLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 166
           R LTLPEMNALLR ME T RS+QCNHGRPTW ++ L +LD LFLRGQ
Sbjct: 612 RQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ 658