BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0043.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM1378 [R] COG4158 Predicted ABC-type sugar transport system, pe... 347 2e-95 YPO3963 [R] COG4158 Predicted ABC-type sugar transport system, p... 333 3e-91 Z5690 [R] COG4158 Predicted ABC-type sugar transport system, per... 322 1e-87 ECs5072 [R] COG4158 Predicted ABC-type sugar transport system, p... 322 1e-87 mll3597 Non COG 318 1e-86 >PM1378 [R] COG4158 Predicted ABC-type sugar transport system, permease component Pmu Pasteurella multocida Length = 323 Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 180/285 (63%), Positives = 228/285 (80%), Gaps = 2/285 (0%) Query: 53 SSNFATAENTMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAA- 111 + NF T N MNI RQ +IN+VLAAGMTFVILT GIDLSVGS+L V+AV+G+ SL+ A Sbjct: 40 APNFMTEANMMNITRQASINIVLAAGMTFVILTGGIDLSVGSILGVTAVIGLVTSLNPAL 99 Query: 112 PGWSIPMFIVSGLLMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIP 171 +++P+ +++GL MG+ NG +VA+ + F+VTLGT TA RGAAYL+ADGTTV+N+ I Sbjct: 100 AEFAVPLALLAGLGMGVFNGLLVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKI- 158 Query: 172 SFEWIGNGDFLHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLV 231 SF WIGNG VPWL+ +A AV+ + W ILR+T LG HIYA+GGNLQAARLTGI+V LV Sbjct: 159 SFSWIGNGYLGSVPWLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLV 218 Query: 232 LLFVYSISGLFSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTV 291 L+FVY+ SGL SGL G MSASRLY ANGN G GYELDAIAAV+LGGTS +GG+GTI GT+ Sbjct: 219 LIFVYAASGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTL 278 Query: 292 VGALIIGVMNNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKDA 336 +GALII +NNG+T++G+S FWQ V KG VI++AV++DK+R + A Sbjct: 279 IGALIIATLNNGMTLMGVSYFWQLVIKGGVIIVAVLIDKYRTRSA 323 >YPO3963 [R] COG4158 Predicted ABC-type sugar transport system, permease component Ype Yersinia pestis Length = 330 Score = 333 bits (854), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 191/334 (57%), Positives = 246/334 (73%), Gaps = 15/334 (4%) Query: 5 TPLHNNAAAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMN 64 TP +A+ + S LL +G+LP+LV++ +F L + NF T N +N Sbjct: 6 TPQQVAKSASLKKAFFSD-LLQTVGILPILVLIVAVFGFL--------APNFFTESNLLN 56 Query: 65 ILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAAPGW---SIPMFIV 121 I RQ +IN+VLAAGMTF+ILT GIDLSVGS+L +AV M +SL PGW SIP ++ Sbjct: 57 IARQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVTAMAVSL--MPGWEGLSIPAALL 114 Query: 122 SGLLMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDF 181 G +G+ NG +VA+ + F+VTLGT TA RG AYLLADGTT++N++I +FEWIGN Sbjct: 115 MGTGLGLFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIINSNI-NFEWIGNAYL 173 Query: 182 LHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGL 241 VPWL+ +A+ VV + W ILR+T LG+HIYA+GGN+QAARLTGI+V +VLLFVY +SGL Sbjct: 174 GPVPWLVVIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGL 233 Query: 242 FSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMN 301 SGL G MSASRLY ANGN G GYELDAIAAV+LGGTS +GGVGTI GT+VGALII +N Sbjct: 234 LSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLN 293 Query: 302 NGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKD 335 NG+T++G+S FWQ V KGAVI++AV++DK+R + Sbjct: 294 NGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRH 327 >Z5690 [R] COG4158 Predicted ABC-type sugar transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 324 Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 243/313 (77%), Gaps = 10/313 (3%) Query: 24 LLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMNILRQVAINLVLAAGMTFVI 83 L+ +G+LP+L+++ +F +T NF T N +NI RQ +IN+VLAAGMTF+I Sbjct: 17 LMQTVGILPILILIVAVFGFIT--------PNFFTESNLLNITRQASINIVLAAGMTFII 68 Query: 84 LTAGIDLSVGSVLAVSAVLGMQISLSAAPGW-SIPMFIVSGLLMGMVNGAMVAFLNINAF 142 LT GIDLSVGS+L +AV M +SLS SIP ++ GLL+G+ NGA+VAF + F Sbjct: 69 LTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPF 128 Query: 143 VVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWVAVAVVLLSWVIL 202 +VTLGT TA RGAAYLLADGTTV+N++I +FEWIGN VPWL+ +A+AV+++ W IL Sbjct: 129 IVTLGTYTALRGAAYLLADGTTVINSNI-NFEWIGNNYLGPVPWLVVIALAVIVVCWFIL 187 Query: 203 RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWG 262 R+T LG+HIYA+GGN+QAARLTGI+V LVLLFVY +SGL SGL G MSASRLY ANGN G Sbjct: 188 RRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLYSANGNLG 247 Query: 263 SGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVI 322 GYELDAIAAV+LGGTS +GG+GTI GT+VGALII +NNG+T++G+S FWQ V KGA+I Sbjct: 248 MGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMI 307 Query: 323 VLAVILDKWRQKD 335 ++AV++DK+R + Sbjct: 308 IIAVLIDKYRTRH 320 >ECs5072 [R] COG4158 Predicted ABC-type sugar transport system, permease component Ecs Escherichia coli O157:H7 Length = 324 Score = 322 bits (824), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 243/313 (77%), Gaps = 10/313 (3%) Query: 24 LLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMNILRQVAINLVLAAGMTFVI 83 L+ +G+LP+L+++ +F +T NF T N +NI RQ +IN+VLAAGMTF+I Sbjct: 17 LMQTVGILPILILIVAVFGFIT--------PNFFTESNLLNITRQASINIVLAAGMTFII 68 Query: 84 LTAGIDLSVGSVLAVSAVLGMQISLSAAPGW-SIPMFIVSGLLMGMVNGAMVAFLNINAF 142 LT GIDLSVGS+L +AV M +SLS SIP ++ GLL+G+ NGA+VAF + F Sbjct: 69 LTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPF 128 Query: 143 VVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWVAVAVVLLSWVIL 202 +VTLGT TA RGAAYLLADGTTV+N++I +FEWIGN VPWL+ +A+AV+++ W IL Sbjct: 129 IVTLGTYTALRGAAYLLADGTTVINSNI-NFEWIGNNYLGPVPWLVVIALAVIVVCWFIL 187 Query: 203 RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWG 262 R+T LG+HIYA+GGN+QAARLTGI+V LVLLFVY +SGL SGL G MSASRLY ANGN G Sbjct: 188 RRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLYSANGNLG 247 Query: 263 SGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVI 322 GYELDAIAAV+LGGTS +GG+GTI GT+VGALII +NNG+T++G+S FWQ V KGA+I Sbjct: 248 MGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMI 307 Query: 323 VLAVILDKWRQKD 335 ++AV++DK+R + Sbjct: 308 IIAVLIDKYRTRH 320 >mll3597 Non COG Length = 330 Score = 318 bits (814), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 180/342 (52%), Positives = 242/342 (70%), Gaps = 17/342 (4%) Query: 1 MAHPTPLHNNAAAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAE 60 M T + AA RS + + LGMLPVLV+L F + + F T Sbjct: 1 MTDRTTTSVDQAAVRSRRLRTAF--AALGMLPVLVLLAAGFQFI--------NPRFLTET 50 Query: 61 NTMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAAPGWS---IP 117 N + + +Q +IN+VLAAGMTFVILT GIDLSVGS+LA SA++ + +SL P W +P Sbjct: 51 NLLIVTQQSSINIVLAAGMTFVILTGGIDLSVGSILAASAMVAVLVSL--VPDWGLLGVP 108 Query: 118 MFIVSGLLMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIG 177 I+ GL G+VNG +VA++ + F+VTLG++TA RG A LL TTV N+D+P F++IG Sbjct: 109 AAILVGLGFGLVNGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSDLP-FDFIG 167 Query: 178 NGDFLHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYS 237 NG +PWL+ +A++VV+LSW++L++TVLG IYA+GGN +AARLTGI+V LVLLFVY Sbjct: 168 NGSLFGIPWLVVIALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYG 227 Query: 238 ISGLFSGLAGAMSASRLYGANG-NWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALI 296 +SGL +GL GAMSA+RLY ANG G YELDAIAAV+LGGTS +GGVG+IWGT++G LI Sbjct: 228 VSGLLAGLGGAMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLI 287 Query: 297 IGVMNNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKDAAQ 338 I V++NGL + G+S WQY+ KG VI++AV LD++R + A+ Sbjct: 288 IAVLSNGLILAGVSDIWQYIIKGLVIIVAVALDRYRLQAGAR 329