BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0038.p         (209 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   167   2e-41
SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinor...   109   4e-24
BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...   108   1e-23
PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    89   6e-18
BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...    82   6e-16

>PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 198

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 125/196 (63%), Gaps = 2/196 (1%)

Query: 1   MSSPQTLIQIAGGSARAATWQEAVLLIIDHQTEYTTGRAPLAGIDAAVGQIAELLRQARA 60
           M  P TL+QI+G     A  +++ LLIID Q EY +G   L G+DAA  +I  L++ ARA
Sbjct: 1   MPHPLTLLQISGRGYPPAPLRQSTLLIIDAQEEYRSGALRLPGLDAAAAEIGVLVQAARA 60

Query: 61  AGAPVIHIVHHSKPGSAMFDPQGPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKN 120
           +G P++H+ H    G  +FDPQGP    +  +QP+  E V+ K LPNAF+GT L + ++N
Sbjct: 61  SGTPIVHVRHLGIQG-GLFDPQGPRGQFLPELQPEAGEKVVEKRLPNAFSGTELHDLLQN 119

Query: 121 TGRKSLIVTGFATHMCVSATVRSALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRV 180
            GR  LIV GF TH  VS TVR+A D+GY  T+  +ACATRD+P  L G  ++AA++QR 
Sbjct: 120 HGRLDLIVCGFMTHSSVSTTVRAAKDYGYRCTLADSACATRDIPT-LNGGVLSAADLQRA 178

Query: 181 ALTELADRYATVVADA 196
            +  L D +A +VA A
Sbjct: 179 EIAALGDNFAAIVAQA 194


>SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinorhizobium
           meliloti
          Length = 260

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 25  LLIIDHQTEY-TTGRAPLAGIDAAVGQIAELLRQARAAGAPVIHIVHHSKPGSAMFDPQG 83
           ++++D Q +Y TTG+ PL GID A+   A L+  AR +G  V++I H S  G+  F    
Sbjct: 85  IIVVDLQNDYLTTGKFPLVGIDKALENAARLVDAARRSGDLVVNIRHESPAGAPFFVSGT 144

Query: 84  PHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTGFATHMCVSATVRS 143
               II  + PQ  E V+ K  PN+F  T L   + + G   + V G  +HMC+ AT R+
Sbjct: 145 EGAEIIPNIAPQHGEAVVTKRYPNSFRETELASLLSSAGVDEVTVIGAMSHMCIDATARA 204

Query: 144 ALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRVALTELADRYATVVA 194
           A D GY +TVV  ACATRDL     G  V AA+V    ++ LA  Y  VV+
Sbjct: 205 ASDLGYKTTVVEDACATRDL--EFRGEVVPAAKVHAAYMSALAFGYGQVVS 253


>BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 180

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 25  LLIIDHQTEYT-TGRAPLAGIDAAVGQIAELLRQARAAGAPVIHIVHHSKPGSA-MFDPQ 82
           LL+ID Q +Y   G+  L   + A    A+LL   R  GAPV H+ H ++   A  F P 
Sbjct: 5   LLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGAPVFHVQHITEGNIAHFFHPN 64

Query: 83  GPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTGFATHMCVSATVR 142
              V I + V+P  +E V+ K +PN+F  T L+  ++  G K L+V G  +HMC+ ATVR
Sbjct: 65  TEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQEEGVKELVVCGMMSHMCIDATVR 124

Query: 143 SALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRVALTELADRYATV 192
           SA++HGY   VV  ACAT  L   +    V A  V    +  L   YATV
Sbjct: 125 SAVEHGYVCQVVEDACATTTL--QIEDKIVPAEHVHYAFMAALNGVYATV 172


>PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 193

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 84/172 (48%), Gaps = 1/172 (0%)

Query: 22  EAVLLIIDHQTEYTTGRAPLAGIDAAVGQIAELLRQARAAGAPVIHIVHHSKPGSAMFDP 81
           +  LLI+D Q        P      A  +I ELL   RAAG PV+H+ H S+   + F P
Sbjct: 12  QVALLIVDLQRGMQRHDLPPRNNPGAEARIVELLAAWRAAGWPVVHVRHVSRQPGSPFAP 71

Query: 82  QGPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTGFATHMCVSATV 141
             P V     + P+ +E V  K +P+AF  + L   +     + + + G AT   V A+ 
Sbjct: 72  GQPGVEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDIRQVALVGVATENSVEASA 131

Query: 142 RSALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRVALTELADRYATVV 193
           RSA + G+ + VVA AC T   PD   G P +A EV  +AL  L   YA V+
Sbjct: 132 RSAGNLGFQTWVVADACFTFAKPD-FHGTPRSADEVHAMALANLHGEYAVVL 182


>BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 187

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 1/174 (0%)

Query: 21  QEAVLLIIDHQTEYTTGRAPLAGIDAAVGQIAELLRQARAAGAPVIHIVHHSKPGSAMFD 80
           ++  L+I+D Q  +   +        A   I+++L   R  G  VI+I H S    ++F 
Sbjct: 3   EKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFH 62

Query: 81  PQGPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTGFATHMCVSAT 140
           P+    AI + V+P  EE+++ K + ++F GT L+E +K     ++++TG  T  CVS T
Sbjct: 63  PKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTT 122

Query: 141 VRSALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRVALTELADRYATVVA 194
            R + + G+ + +++ A A   + D        AA +  ++L  L D +AT++ 
Sbjct: 123 TRMSGNLGFDTYLISDATAAFGMRDQ-NDTYYDAATIHNISLATLHDEFATILT 175